Wall clock time and date at job start Mon Mar 30 2020 03:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46909 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46868 * 209.99959 * 8 6 4 11 11 H 1.48495 * 109.46964 * 330.00013 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 N 1.33767 * 126.08298 * 60.02634 * 12 2 1 14 14 C 1.30385 * 109.48332 * 179.97438 * 13 12 2 15 15 N 1.37546 * 108.86742 * 0.02562 * 14 13 12 16 16 C 1.37648 * 140.04107 * 180.02562 * 15 14 13 17 17 C 1.30879 * 116.39031 * 179.26614 * 16 15 14 18 18 S 1.75787 * 109.97856 * 0.55518 * 17 16 15 19 19 C 1.36063 * 106.38733 * 359.75719 * 15 14 13 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 23 23 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 24 24 H 1.07997 * 125.56244 * 180.02562 * 14 13 12 25 25 H 1.07993 * 121.80430 * 359.97438 * 16 15 14 26 26 H 1.07999 * 125.00863 * 180.16554 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 6 2.0324 -0.7104 1.2304 13 7 1.7858 -1.9828 1.5614 14 6 2.3782 -2.2615 2.6889 15 7 3.0436 -1.1416 3.1305 16 6 3.8326 -0.7283 4.1800 17 6 4.2593 0.5081 4.1353 18 16 3.6521 1.3011 2.6887 19 6 2.8228 -0.1725 2.2013 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 0.7095 1.1620 -3.4843 24 1 2.3509 -3.2159 3.1937 25 1 4.0951 -1.3920 4.9905 26 1 4.8863 0.9745 4.8808 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261301255.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:13 Heat of formation + Delta-G solvation = 71.927066 kcal Electronic energy + Delta-G solvation = -12687.834803 eV Core-core repulsion = 10472.812889 eV Total energy + Delta-G solvation = -2215.021914 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.44216 -37.76553 -35.91118 -32.90385 -31.04216 -29.56910 -27.21665 -24.72684 -23.63963 -21.75937 -21.24886 -18.90943 -18.18695 -16.78678 -16.71787 -16.19788 -15.83151 -15.15777 -14.74402 -14.29968 -14.05339 -13.52902 -13.10641 -12.83925 -12.54859 -12.34190 -12.18544 -11.99927 -11.77478 -11.25764 -10.95916 -10.72202 -10.47621 -10.22434 -8.20764 -8.00477 -6.21191 0.18428 0.35912 0.99613 1.35081 1.40955 1.42604 1.52886 1.89321 2.20649 2.47010 3.17944 3.75865 3.79144 4.17534 4.45336 4.54277 4.69259 4.86447 5.02185 5.18991 5.22336 5.49751 5.62778 5.81596 6.01410 6.33436 6.39494 6.82581 7.10226 7.44833 8.96779 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.039715 B = 0.008598 C = 0.008220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.854566 B = 3255.685739 C = 3405.675404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.115 3.885 3 H 0.008 0.992 4 C -0.513 4.513 5 H 0.040 0.960 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.274 1.274 12 C 0.062 3.938 13 N -0.487 5.487 14 C 0.190 3.810 15 N -0.420 5.420 16 C 0.041 3.959 17 C -0.206 4.206 18 S 0.089 5.911 19 C -0.130 4.130 20 H 0.026 0.974 21 H 0.017 0.983 22 H 0.064 0.936 23 H 0.263 0.737 24 H 0.259 0.741 25 H 0.229 0.771 26 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 -1.979 15.553 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.096 3.904 3 H 0.026 0.974 4 C -0.552 4.552 5 H 0.058 0.942 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.199 1.199 12 C -0.075 4.075 13 N -0.203 5.203 14 C -0.092 4.092 15 N -0.101 5.101 16 C -0.086 4.086 17 C -0.342 4.342 18 S 0.344 5.656 19 C -0.352 4.352 20 H 0.045 0.955 21 H 0.036 0.964 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.275 0.725 25 H 0.245 0.755 26 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.772 -1.127 14.527 16.067 hybrid contribution 0.358 -1.099 -0.112 1.162 sum 7.131 -2.226 14.415 16.235 Atomic orbital electron populations 1.21492 0.97296 0.98877 0.99306 1.17047 0.93005 0.92594 0.87778 0.97443 1.21178 1.31016 1.11795 0.91170 0.94171 1.25709 0.95323 0.95778 1.01656 1.69998 1.37642 1.23945 1.24125 0.85548 0.78647 0.78432 0.78957 1.19991 1.20130 1.19904 1.20769 0.99544 0.90414 0.96793 1.69944 1.22984 1.14639 1.12691 1.26250 0.96517 0.92754 0.93652 1.44485 1.37482 1.11085 1.17011 1.21165 0.96047 0.98226 0.93140 1.25551 1.08722 0.96798 1.03172 1.84619 1.52322 1.08091 1.20543 1.24345 1.13932 0.96892 1.00014 0.95502 0.96354 0.91703 0.92731 0.72498 0.75472 0.75192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.11 8.95 71.98 0.64 -5.46 15 2 C 0.12 6.54 2.71 -12.29 -0.03 6.51 15 3 H 0.01 0.46 8.11 -2.39 -0.02 0.44 15 4 C -0.51 -31.10 8.55 25.60 0.22 -30.89 15 5 H 0.04 2.50 7.74 -2.91 -0.02 2.47 15 6 C 0.01 0.80 5.30 84.66 0.45 1.25 15 7 N -0.92 -55.22 11.32 21.45 0.24 -54.98 15 8 Si 0.96 46.29 29.54 68.60 2.03 48.32 15 9 H -0.27 -12.90 7.11 99.48 0.71 -12.19 15 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 11 H -0.27 -13.06 7.11 99.48 0.71 -12.35 15 12 C 0.06 3.09 5.59 41.80 0.23 3.32 15 13 N -0.49 -22.23 11.22 -185.61 -2.08 -24.32 15 14 C 0.19 6.30 13.08 179.48 2.35 8.64 15 15 N -0.42 -13.43 3.19 -356.20 -1.14 -14.57 15 16 C 0.04 0.84 11.27 83.86 0.94 1.78 15 17 C -0.21 -4.10 11.10 67.90 0.75 -3.35 15 18 S 0.09 2.89 23.36 -56.49 -1.32 1.57 15 19 C -0.13 -5.38 7.73 83.57 0.65 -4.73 15 20 H 0.03 1.44 8.14 -2.39 -0.02 1.42 15 21 H 0.02 0.89 8.14 -2.39 -0.02 0.87 15 22 H 0.06 3.77 6.07 -2.39 -0.01 3.76 15 23 H 0.26 14.91 8.31 -92.70 -0.77 14.14 15 24 H 0.26 5.22 8.06 -2.91 -0.02 5.19 15 25 H 0.23 2.10 8.06 -2.91 -0.02 2.08 15 26 H 0.23 2.22 8.06 -2.91 -0.02 2.19 15 Total: -1.00 -76.04 244.90 5.12 -70.92 By element: Atomic # 1 Polarization: -5.20 SS G_CDS: 1.18 Total: -4.01 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 6.20 Total: -22.92 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -2.97 Total: -93.87 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.32 Total: 1.57 kcal Total: -76.04 5.12 -70.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301255.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.844 kcal (2) G-P(sol) polarization free energy of solvation -76.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds