Wall clock time and date at job start Mon Mar 30 2020 03:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99737 * 2 1 3 5 5 H 1.07999 * 119.99515 * 120.00667 * 4 2 1 6 6 C 1.37870 * 120.00176 * 300.00134 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47293 * 89.99746 * 8 6 4 10 10 H 1.48504 * 109.47104 * 209.99992 * 8 6 4 11 11 H 1.48495 * 109.47249 * 329.99739 * 8 6 4 12 12 C 1.50698 * 109.46976 * 239.99738 * 2 1 3 13 13 N 1.33758 * 126.08876 * 299.68710 * 12 2 1 14 14 C 1.30386 * 109.48568 * 179.85927 * 13 12 2 15 15 N 1.37544 * 108.86843 * 0.40922 * 14 13 12 16 16 C 1.37645 * 140.04818 * 179.74752 * 15 14 13 17 17 C 1.30870 * 116.39994 * 180.02562 * 16 15 14 18 18 S 1.75798 * 109.97807 * 359.97438 * 17 16 15 19 19 C 1.36068 * 106.39001 * 359.75254 * 15 14 13 20 20 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47059 * 299.99766 * 1 2 3 22 22 H 1.08992 * 109.47060 * 60.00250 * 1 2 3 23 23 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 24 24 H 1.07998 * 125.56750 * 180.15348 * 14 13 12 25 25 H 1.07999 * 121.80464 * 359.97438 * 16 15 14 26 26 H 1.07994 * 125.01591 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5440 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4879 -2.5653 3.7123 12 6 2.0323 -0.7105 -1.2304 13 7 1.7902 -1.9843 -1.5587 14 6 2.3782 -2.2615 -2.6890 15 7 3.0439 -1.1418 -3.1303 16 6 3.8328 -0.7284 -4.1798 17 6 4.2483 0.5120 -4.1420 18 16 3.6416 1.3049 -2.6951 19 6 2.8190 -0.1711 -2.2037 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 0.7087 1.1613 3.4844 24 1 2.3507 -3.2158 -3.1939 25 1 4.0956 -1.3921 -4.9903 26 1 4.8720 0.9797 -4.8895 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261301256.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:15 Heat of formation + Delta-G solvation = 91.819434 kcal Electronic energy + Delta-G solvation = -12686.853762 eV Core-core repulsion = 10472.694446 eV Total energy + Delta-G solvation = -2214.159316 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.03729 -36.38129 -33.93382 -30.91584 -29.73724 -27.93457 -25.00299 -23.27208 -22.06237 -20.31892 -19.77307 -17.42292 -16.08919 -15.33575 -15.19511 -14.52564 -14.44726 -13.94236 -12.93098 -12.73094 -12.31190 -11.74975 -11.27667 -10.83030 -10.80848 -10.72438 -10.38354 -10.04229 -9.86015 -9.47467 -9.34747 -8.89197 -8.78304 -8.27293 -6.72352 -5.89450 -3.94105 1.34174 1.67760 2.17827 2.66194 3.08314 3.38555 3.44215 3.49838 3.77223 4.54287 4.84057 5.00563 5.35037 5.38141 5.41871 5.84380 6.18649 6.41945 6.97192 7.05119 7.24907 7.38639 7.63722 7.77071 7.99347 8.20096 8.45810 8.66305 9.06620 9.68586 11.16373 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.039750 B = 0.008596 C = 0.008216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.238992 B = 3256.704876 C = 3407.148505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.114 3.886 3 H 0.037 0.963 4 C -0.493 4.493 5 H 0.057 0.943 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.114 3.886 13 N -0.437 5.437 14 C 0.172 3.828 15 N -0.422 5.422 16 C 0.050 3.950 17 C -0.230 4.230 18 S 0.122 5.878 19 C -0.117 4.117 20 H 0.035 0.965 21 H 0.086 0.914 22 H 0.004 0.996 23 H 0.260 0.740 24 H 0.207 0.793 25 H 0.172 0.828 26 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.513 -0.980 -13.416 14.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.094 3.906 3 H 0.055 0.945 4 C -0.532 4.532 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.024 4.024 13 N -0.152 5.152 14 C -0.110 4.110 15 N -0.104 5.104 16 C -0.080 4.080 17 C -0.369 4.369 18 S 0.378 5.622 19 C -0.337 4.337 20 H 0.054 0.946 21 H 0.105 0.895 22 H 0.023 0.977 23 H 0.070 0.930 24 H 0.223 0.777 25 H 0.190 0.810 26 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.131 -0.143 -12.354 13.378 hybrid contribution 0.813 -1.424 -0.407 1.690 sum 5.944 -1.567 -12.761 14.165 Atomic orbital electron populations 1.21698 0.97176 0.99799 0.99863 1.17336 0.93050 0.93918 0.86287 0.94504 1.21007 1.30638 1.11999 0.89563 0.92506 1.24926 0.95223 0.95105 0.98832 1.69891 1.37048 1.23113 1.23285 0.86550 0.78431 0.80188 0.82604 1.20819 1.21247 1.19901 1.21339 0.96103 0.88874 0.96052 1.70124 1.20525 1.14814 1.09741 1.25368 0.99031 0.91402 0.95154 1.44202 1.37294 1.12066 1.16803 1.20281 0.97413 0.97005 0.93327 1.24996 1.09397 0.97474 1.05017 1.84514 1.52404 1.08321 1.16965 1.24196 1.14843 0.94610 1.00084 0.94629 0.89548 0.97673 0.93044 0.77695 0.81042 0.80126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.95 37.16 0.33 -2.99 15 2 C 0.11 3.06 2.72 -92.92 -0.25 2.81 15 3 H 0.04 1.05 8.11 -51.93 -0.42 0.62 15 4 C -0.49 -14.35 8.55 -34.44 -0.29 -14.64 15 5 H 0.06 1.69 7.74 -52.49 -0.41 1.29 15 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -26.12 11.32 55.43 0.63 -25.49 15 8 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 15 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 15 12 C 0.11 2.75 5.59 -82.46 -0.46 2.29 15 13 N -0.44 -9.91 11.21 -10.02 -0.11 -10.02 15 14 C 0.17 3.03 13.08 -88.14 -1.15 1.88 15 15 N -0.42 -7.30 3.19 -63.93 -0.20 -7.51 15 16 C 0.05 0.64 11.26 -16.62 -0.19 0.45 15 17 C -0.23 -2.81 11.10 29.05 0.32 -2.49 15 18 S 0.12 2.02 23.36 -107.50 -2.51 -0.49 15 19 C -0.12 -2.44 7.73 -16.38 -0.13 -2.56 15 20 H 0.03 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.09 2.40 6.07 -51.93 -0.32 2.08 15 22 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 15 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 24 H 0.21 2.53 8.06 -52.49 -0.42 2.10 15 25 H 0.17 1.41 8.06 -52.49 -0.42 0.99 15 26 H 0.18 1.45 8.06 -52.49 -0.42 1.03 15 LS Contribution 244.90 15.07 3.69 3.69 Total: -1.00 -32.78 244.90 -7.83 -40.61 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: -2.39 Total: -4.28 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.91 Total: -13.63 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.31 Total: -43.02 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.51 Total: -0.49 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.78 -7.83 -40.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301256.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.431 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds