Wall clock time and date at job start Mon Mar 30 2020 02:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.09004 * 109.46833 * 102.52895 * 3 2 1 5 5 N 1.46903 * 109.46866 * 222.52190 * 3 2 1 6 6 C 1.46893 * 111.00120 * 277.58690 * 5 3 2 7 7 C 1.53002 * 109.47320 * 175.41540 * 6 5 3 8 8 C 1.50706 * 115.54992 * 279.48678 * 7 6 5 9 9 H 1.07995 * 120.00262 * 95.54557 * 8 7 6 10 10 C 1.37880 * 119.99726 * 275.54932 * 8 7 6 11 11 N 1.31511 * 120.00024 * 5.38935 * 10 8 7 12 12 Si 1.86796 * 119.99683 * 185.38656 * 10 8 7 13 13 H 1.48501 * 109.47432 * 60.00274 * 12 10 8 14 14 H 1.48504 * 109.46958 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47563 * 299.99880 * 12 10 8 16 16 C 1.52999 * 117.50460 * 133.77678 * 7 6 5 17 17 C 1.53004 * 117.50053 * 65.14982 * 7 6 5 18 18 C 1.52998 * 109.47762 * 342.52194 * 3 2 1 19 19 C 1.52999 * 109.47261 * 302.98625 * 18 3 2 20 20 C 1.53006 * 109.46678 * 62.98249 * 18 3 2 21 21 H 4.18733 * 15.03890 * 0.02562 * 4 2 1 22 22 H 1.00903 * 110.99842 * 41.54365 * 5 3 2 23 23 H 1.08997 * 109.47582 * 295.41247 * 6 5 3 24 24 H 1.09006 * 109.47280 * 55.41481 * 6 5 3 25 25 H 0.97002 * 120.00030 * 185.00378 * 11 10 8 26 26 H 1.08999 * 117.49203 * 359.97438 * 16 7 6 27 27 H 1.08989 * 117.50213 * 145.02266 * 16 7 6 28 28 H 1.08989 * 117.49941 * 214.98182 * 17 7 6 29 29 H 1.09001 * 117.49186 * 359.97438 * 17 7 6 30 30 H 1.08994 * 109.47414 * 182.97833 * 18 3 2 31 31 H 1.09005 * 109.46974 * 55.52138 * 19 18 3 32 32 H 1.09001 * 109.47049 * 295.52722 * 19 18 3 33 33 H 1.09002 * 109.47113 * 175.52687 * 19 18 3 34 34 H 1.09003 * 109.46876 * 299.99995 * 20 18 3 35 35 H 1.09000 * 109.46961 * 59.99743 * 20 18 3 36 36 H 1.09004 * 109.46978 * 180.02562 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.2238 -1.0032 5 7 3.1351 1.0217 0.9361 6 6 3.1393 2.3507 0.3105 7 6 3.5442 3.4010 1.3468 8 6 2.4491 3.8496 2.2798 9 1 2.3450 3.3893 3.2512 10 6 1.5798 4.8476 1.8931 11 7 1.6385 5.3343 0.6728 12 14 0.3190 5.5083 3.1027 13 1 1.0167 6.0779 4.2834 14 1 -0.4891 6.5673 2.4462 15 1 -0.5734 4.4049 3.5397 16 6 4.5869 4.4400 0.9295 17 6 4.9652 3.3273 1.9093 18 6 3.1567 -1.3749 0.4332 19 6 2.5866 -1.7202 1.8104 20 6 2.7094 -2.4281 -0.5826 21 1 -1.0500 0.0004 0.0004 22 1 2.5909 1.0236 1.7858 23 1 3.8510 2.3616 -0.5149 24 1 2.1421 2.5780 -0.0666 25 1 1.0774 6.0850 0.4225 26 1 4.9847 4.3750 -0.0832 27 1 4.4809 5.4482 1.3296 28 1 5.1080 3.6037 2.9538 29 1 5.6114 2.5303 1.5413 30 1 4.2454 -1.3588 0.4843 31 1 1.4987 -1.6587 1.7791 32 1 2.9692 -1.0158 2.5490 33 1 2.8856 -2.7320 2.0842 34 1 1.6207 -2.4442 -0.6337 35 1 3.1156 -2.1821 -1.5637 36 1 3.0729 -3.4082 -0.2738 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300998030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:46 Heat of formation + Delta-G solvation = 62.676187 kcal Electronic energy + Delta-G solvation = -15191.355386 eV Core-core repulsion = 12870.271553 eV Total energy + Delta-G solvation = -2321.083833 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.98967 -36.29751 -32.75589 -31.90255 -31.55202 -26.99726 -26.60438 -25.31426 -23.08426 -20.91915 -20.51667 -19.11003 -17.45078 -16.04494 -15.34562 -14.64595 -14.32617 -14.23046 -14.06420 -13.65929 -12.68769 -12.45351 -12.14393 -11.88402 -11.61601 -11.49333 -10.97442 -10.96980 -10.82405 -10.71755 -10.54099 -10.47514 -10.12546 -10.00893 -9.69854 -9.34010 -8.73188 -8.37791 -8.08754 -7.65835 -6.01479 -4.08268 3.24061 3.27064 3.30490 3.35547 3.38241 4.41793 4.69451 4.82768 5.21278 5.27093 5.29024 5.41758 5.62338 5.79283 5.86917 5.98377 6.07815 6.14349 6.20759 6.27321 6.32170 6.53749 6.55184 6.59444 6.62911 6.87343 6.91950 6.94122 7.20846 7.56162 7.62017 7.88601 7.88805 8.04641 8.18724 8.49701 8.94979 9.58285 11.07024 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.008547 C = 0.007422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.461430 B = 3275.204834 C = 3771.784738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.191 4.191 3 C 0.192 3.808 4 H 0.089 0.911 5 N -0.666 5.666 6 C 0.102 3.898 7 C 0.044 3.956 8 C -0.497 4.497 9 H 0.057 0.943 10 C 0.072 3.928 11 N -0.878 5.878 12 Si 0.885 3.115 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.160 4.160 17 C -0.197 4.197 18 C -0.078 4.078 19 C -0.147 4.147 20 C -0.147 4.147 21 H 0.209 0.791 22 H 0.349 0.651 23 H 0.041 0.959 24 H 0.039 0.961 25 H 0.259 0.741 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.068 -11.012 -1.583 11.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.193 4.193 3 C 0.082 3.918 4 H 0.106 0.894 5 N -0.295 5.295 6 C -0.027 4.027 7 C 0.044 3.956 8 C -0.535 4.535 9 H 0.076 0.924 10 C -0.131 4.131 11 N -0.514 5.514 12 Si 0.713 3.287 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.198 4.198 17 C -0.234 4.234 18 C -0.097 4.097 19 C -0.204 4.204 20 C -0.205 4.205 21 H 0.226 0.774 22 H 0.168 0.832 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.634 -11.008 -1.865 11.283 hybrid contribution -1.980 0.846 0.525 2.217 sum -0.347 -10.162 -1.339 10.255 Atomic orbital electron populations 1.24827 0.95904 1.01477 1.01586 1.24404 0.95667 0.99487 0.99731 1.18920 0.81642 0.93447 0.97781 0.89363 1.60948 1.56257 1.05441 1.06899 1.21599 0.99189 0.86304 0.95599 1.18764 0.87373 0.93928 0.95565 1.20454 1.12057 1.20353 1.00602 0.92440 1.24964 0.96692 0.96782 0.94684 1.70009 1.40022 1.24460 1.16920 0.86774 0.81638 0.78738 0.81543 1.20241 1.21346 1.20280 1.22521 1.05813 0.94999 0.96470 1.22830 1.01904 1.01046 0.97628 1.21053 1.00818 0.92524 0.95281 1.21832 1.00882 1.00762 0.96914 1.21863 1.01486 0.98330 0.98841 0.77403 0.83198 0.94075 0.94244 0.93082 0.92135 0.90400 0.91017 0.91237 0.89844 0.92973 0.91733 0.93330 0.92760 0.92868 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.61 19.25 29.55 0.57 -3.04 16 2 C -0.19 -3.33 9.58 -37.12 -0.36 -3.69 16 3 C 0.19 3.19 2.28 -70.50 -0.16 3.03 16 4 H 0.09 1.46 7.90 -51.93 -0.41 1.05 16 5 N -0.67 -12.86 5.90 -109.71 -0.65 -13.51 16 6 C 0.10 2.30 5.38 -3.83 -0.02 2.28 16 7 C 0.04 1.09 1.44 -155.65 -0.22 0.87 16 8 C -0.50 -13.49 8.75 -34.44 -0.30 -13.79 16 9 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 10 C 0.07 1.98 5.40 -17.82 -0.10 1.88 16 11 N -0.88 -25.02 12.93 55.43 0.72 -24.30 16 12 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 16 C -0.16 -3.83 9.40 -26.73 -0.25 -4.08 16 17 C -0.20 -4.38 9.91 -26.73 -0.26 -4.65 16 18 C -0.08 -1.06 2.91 -90.62 -0.26 -1.32 16 19 C -0.15 -1.97 8.66 37.16 0.32 -1.65 16 20 C -0.15 -1.73 8.98 37.16 0.33 -1.39 16 21 H 0.21 2.72 7.80 -54.09 -0.42 2.30 16 22 H 0.35 7.16 7.64 -39.29 -0.30 6.86 16 23 H 0.04 0.90 7.94 -51.93 -0.41 0.49 16 24 H 0.04 1.01 7.78 -51.93 -0.40 0.61 16 25 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 26 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 27 H 0.08 1.98 8.14 -51.94 -0.42 1.56 16 28 H 0.07 1.59 8.14 -51.94 -0.42 1.17 16 29 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.74 6.98 -51.93 -0.36 0.37 16 32 H 0.06 0.93 7.44 -51.93 -0.39 0.54 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.67 7.32 -51.93 -0.38 0.29 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 303.63 15.07 4.58 4.58 Total: -1.00 -28.07 303.63 -7.09 -35.16 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.00 Total: 7.39 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: -0.71 Total: -25.54 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.07 Total: -37.81 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.07 -7.09 -35.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300998030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.839 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds