Wall clock time and date at job start Mon Mar 30 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.09004 * 109.46833 * 102.52895 * 3 2 1 5 5 N 1.46903 * 109.46866 * 222.52190 * 3 2 1 6 6 C 1.46893 * 111.00120 * 277.58690 * 5 3 2 7 7 C 1.53002 * 109.47320 * 175.41540 * 6 5 3 8 8 C 1.50706 * 115.54992 * 279.48678 * 7 6 5 9 9 H 1.07995 * 120.00262 * 95.54557 * 8 7 6 10 10 C 1.37880 * 119.99726 * 275.54932 * 8 7 6 11 11 N 1.31511 * 120.00024 * 5.38935 * 10 8 7 12 12 Si 1.86796 * 119.99683 * 185.38656 * 10 8 7 13 13 H 1.48501 * 109.47432 * 60.00274 * 12 10 8 14 14 H 1.48504 * 109.46958 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47563 * 299.99880 * 12 10 8 16 16 C 1.52999 * 117.50460 * 133.77678 * 7 6 5 17 17 C 1.53004 * 117.50053 * 65.14982 * 7 6 5 18 18 C 1.52998 * 109.47762 * 342.52194 * 3 2 1 19 19 C 1.52999 * 109.47261 * 302.98625 * 18 3 2 20 20 C 1.53006 * 109.46678 * 62.98249 * 18 3 2 21 21 H 4.18733 * 15.03890 * 0.02562 * 4 2 1 22 22 H 1.00903 * 110.99842 * 41.54365 * 5 3 2 23 23 H 1.08997 * 109.47582 * 295.41247 * 6 5 3 24 24 H 1.09006 * 109.47280 * 55.41481 * 6 5 3 25 25 H 0.97002 * 120.00030 * 185.00378 * 11 10 8 26 26 H 1.08999 * 117.49203 * 359.97438 * 16 7 6 27 27 H 1.08989 * 117.50213 * 145.02266 * 16 7 6 28 28 H 1.08989 * 117.49941 * 214.98182 * 17 7 6 29 29 H 1.09001 * 117.49186 * 359.97438 * 17 7 6 30 30 H 1.08994 * 109.47414 * 182.97833 * 18 3 2 31 31 H 1.09005 * 109.46974 * 55.52138 * 19 18 3 32 32 H 1.09001 * 109.47049 * 295.52722 * 19 18 3 33 33 H 1.09002 * 109.47113 * 175.52687 * 19 18 3 34 34 H 1.09003 * 109.46876 * 299.99995 * 20 18 3 35 35 H 1.09000 * 109.46961 * 59.99743 * 20 18 3 36 36 H 1.09004 * 109.46978 * 180.02562 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.2238 -1.0032 5 7 3.1351 1.0217 0.9361 6 6 3.1393 2.3507 0.3105 7 6 3.5442 3.4010 1.3468 8 6 2.4491 3.8496 2.2798 9 1 2.3450 3.3893 3.2512 10 6 1.5798 4.8476 1.8931 11 7 1.6385 5.3343 0.6728 12 14 0.3190 5.5083 3.1027 13 1 1.0167 6.0779 4.2834 14 1 -0.4891 6.5673 2.4462 15 1 -0.5734 4.4049 3.5397 16 6 4.5869 4.4400 0.9295 17 6 4.9652 3.3273 1.9093 18 6 3.1567 -1.3749 0.4332 19 6 2.5866 -1.7202 1.8104 20 6 2.7094 -2.4281 -0.5826 21 1 -1.0500 0.0004 0.0004 22 1 2.5909 1.0236 1.7858 23 1 3.8510 2.3616 -0.5149 24 1 2.1421 2.5780 -0.0666 25 1 1.0774 6.0850 0.4225 26 1 4.9847 4.3750 -0.0832 27 1 4.4809 5.4482 1.3296 28 1 5.1080 3.6037 2.9538 29 1 5.6114 2.5303 1.5413 30 1 4.2454 -1.3588 0.4843 31 1 1.4987 -1.6587 1.7791 32 1 2.9692 -1.0158 2.5490 33 1 2.8856 -2.7320 2.0842 34 1 1.6207 -2.4442 -0.6337 35 1 3.1156 -2.1821 -1.5637 36 1 3.0729 -3.4082 -0.2738 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300998030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:45 Heat of formation + Delta-G solvation = 47.227519 kcal Electronic energy + Delta-G solvation = -15192.025291 eV Core-core repulsion = 12870.271553 eV Total energy + Delta-G solvation = -2321.753738 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.45048 -37.97883 -34.23001 -33.86098 -32.93227 -28.24445 -28.00364 -27.24573 -24.65777 -22.78619 -21.66585 -21.02424 -18.79757 -17.95842 -16.74373 -16.62878 -15.81400 -15.76417 -15.37218 -15.20041 -14.42131 -13.74260 -13.50091 -13.36183 -13.27735 -12.97181 -12.83838 -12.77901 -12.39665 -12.19374 -11.95963 -11.80097 -11.61360 -11.49747 -11.24593 -10.91942 -10.69961 -10.39427 -9.95500 -9.31880 -8.11008 -6.22803 1.39458 1.40095 1.47343 1.89345 1.94724 2.41434 3.18018 3.28564 3.50171 3.75915 4.10620 4.15570 4.29608 4.38630 4.63614 4.68544 4.75533 4.86568 4.87531 4.95735 5.04208 5.07608 5.09487 5.10986 5.17276 5.27171 5.31213 5.50505 5.53939 5.68400 5.70538 5.80188 6.24110 6.43315 6.52785 6.73494 6.87264 7.46189 8.96843 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.008547 C = 0.007422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.461430 B = 3275.204834 C = 3771.784738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.222 4.222 3 C 0.189 3.811 4 H 0.087 0.913 5 N -0.657 5.657 6 C 0.119 3.881 7 C 0.020 3.980 8 C -0.509 4.509 9 H 0.051 0.949 10 C 0.026 3.974 11 N -0.906 5.906 12 Si 0.943 3.057 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.273 1.273 16 C -0.167 4.167 17 C -0.169 4.169 18 C -0.072 4.072 19 C -0.143 4.143 20 C -0.142 4.142 21 H 0.236 0.764 22 H 0.341 0.659 23 H 0.047 0.953 24 H 0.001 0.999 25 H 0.258 0.742 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.058 0.942 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.191 -12.376 -1.219 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.223 4.223 3 C 0.079 3.921 4 H 0.105 0.895 5 N -0.285 5.285 6 C -0.010 4.010 7 C 0.019 3.981 8 C -0.547 4.547 9 H 0.069 0.931 10 C -0.174 4.174 11 N -0.544 5.544 12 Si 0.769 3.231 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.205 4.205 17 C -0.207 4.207 18 C -0.091 4.091 19 C -0.201 4.201 20 C -0.200 4.200 21 H 0.253 0.747 22 H 0.159 0.841 23 H 0.065 0.935 24 H 0.019 0.981 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.764 -12.389 -1.494 12.603 hybrid contribution -2.023 1.239 0.402 2.406 sum -0.259 -11.150 -1.092 11.207 Atomic orbital electron populations 1.25620 0.96914 1.00500 1.00487 1.24721 0.96402 1.00459 1.00765 1.19084 0.81630 0.94188 0.97153 0.89523 1.60941 1.56366 1.04265 1.06885 1.21267 0.96960 0.87604 0.95204 1.18880 0.87888 0.94944 0.96359 1.20735 1.12848 1.20370 1.00747 0.93066 1.25633 0.98437 0.97206 0.96116 1.70117 1.41036 1.24872 1.18332 0.85848 0.79473 0.78119 0.79615 1.19724 1.21181 1.19853 1.22459 1.06385 0.94207 0.97481 1.22796 1.00281 1.00325 0.97266 1.21038 1.01003 0.91129 0.95902 1.21798 1.00100 1.01720 0.96433 1.21816 1.00971 0.98596 0.98569 0.74726 0.84089 0.93470 0.98093 0.93289 0.91069 0.92594 0.90967 0.89053 0.89245 0.94015 0.93080 0.91086 0.93588 0.92280 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -6.93 19.25 74.32 1.43 -5.49 16 2 C -0.22 -7.62 9.58 31.13 0.30 -7.32 16 3 C 0.19 6.14 2.28 43.11 0.10 6.24 16 4 H 0.09 2.81 7.90 -2.38 -0.02 2.79 16 5 N -0.66 -25.04 5.90 -501.00 -2.95 -27.99 16 6 C 0.12 5.41 5.38 86.31 0.46 5.87 16 7 C 0.02 0.98 1.44 -52.92 -0.08 0.90 16 8 C -0.51 -27.79 8.75 25.60 0.22 -27.56 16 9 H 0.05 2.79 7.82 -2.91 -0.02 2.76 16 10 C 0.03 1.46 5.40 84.66 0.46 1.91 16 11 N -0.91 -52.35 12.93 21.45 0.28 -52.07 16 12 Si 0.94 43.75 29.54 68.60 2.03 45.78 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 15 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 16 C -0.17 -7.98 9.40 30.60 0.29 -7.69 16 17 C -0.17 -7.33 9.91 30.60 0.30 -7.02 16 18 C -0.07 -1.83 2.91 -10.79 -0.03 -1.86 16 19 C -0.14 -3.61 8.66 71.98 0.62 -2.98 16 20 C -0.14 -2.99 8.98 71.98 0.65 -2.34 16 21 H 0.24 5.73 7.80 -4.42 -0.03 5.70 16 22 H 0.34 13.99 7.64 -89.69 -0.69 13.30 16 23 H 0.05 2.05 7.94 -2.39 -0.02 2.03 16 24 H 0.00 0.04 7.78 -2.38 -0.02 0.02 16 25 H 0.26 14.36 8.32 -92.71 -0.77 13.59 16 26 H 0.07 3.19 8.08 -2.39 -0.02 3.17 16 27 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 29 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.04 1.12 6.98 -2.38 -0.02 1.11 16 32 H 0.05 1.41 7.44 -2.39 -0.02 1.39 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.05 7.32 -2.39 -0.02 1.03 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -59.37 303.63 4.42 -54.95 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.34 Total: 26.69 kcal Atomic # 6 Polarization: -52.08 SS G_CDS: 4.73 Total: -47.35 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -2.68 Total: -80.07 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -59.37 4.42 -54.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300998030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.180 kcal (2) G-P(sol) polarization free energy of solvation -59.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds