Wall clock time and date at job start Mon Mar 30 2020 02:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47006 * 316.28638 * 3 2 1 5 5 N 1.46901 * 109.47164 * 196.28836 * 3 2 1 6 6 C 1.46904 * 111.00285 * 87.20417 * 5 3 2 7 7 C 1.53002 * 109.47041 * 174.45936 * 6 5 3 8 8 C 1.50696 * 115.56130 * 39.71112 * 7 6 5 9 9 H 1.07995 * 120.00320 * 267.53729 * 8 7 6 10 10 C 1.37877 * 119.99854 * 87.54016 * 8 7 6 11 11 N 1.31515 * 120.00269 * 181.83143 * 10 8 7 12 12 Si 1.86796 * 120.00147 * 1.83053 * 10 8 7 13 13 H 1.48495 * 109.47220 * 88.64798 * 12 10 8 14 14 H 1.48505 * 109.47331 * 208.65146 * 12 10 8 15 15 H 1.48504 * 109.46950 * 328.64874 * 12 10 8 16 16 C 1.52998 * 117.49540 * 185.40380 * 7 6 5 17 17 C 1.52994 * 60.03111 * 107.47535 * 16 7 6 18 18 C 1.53002 * 109.47063 * 76.28764 * 3 2 1 19 19 C 1.53005 * 109.46925 * 175.14607 * 18 3 2 20 20 C 1.52998 * 109.46755 * 295.14293 * 18 3 2 21 21 H 4.18733 * 15.03924 * 359.97438 * 4 2 1 22 22 H 1.00900 * 110.99599 * 323.24803 * 5 3 2 23 23 H 1.09005 * 109.46779 * 54.45878 * 6 5 3 24 24 H 1.08994 * 109.46802 * 294.45997 * 6 5 3 25 25 H 0.97001 * 120.00459 * 180.02562 * 11 10 8 26 26 H 1.09001 * 117.49331 * 214.97857 * 16 7 6 27 27 H 1.08998 * 117.50194 * 359.96888 * 16 7 6 28 28 H 1.09006 * 117.49727 * 107.50187 * 17 16 7 29 29 H 1.09004 * 117.49878 * 252.51548 * 17 16 7 30 30 H 1.08987 * 109.47274 * 55.14415 * 18 3 2 31 31 H 1.08999 * 109.47049 * 183.09518 * 19 18 3 32 32 H 1.08999 * 109.46896 * 303.09983 * 19 18 3 33 33 H 1.09005 * 109.46825 * 63.09513 * 19 18 3 34 34 H 1.08998 * 109.47469 * 60.00207 * 20 18 3 35 35 H 1.09004 * 109.46947 * 180.02562 * 20 18 3 36 36 H 1.09004 * 109.47235 * 300.00179 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.7420 0.7102 5 7 3.1351 1.3303 0.3885 6 6 3.2475 1.4440 1.8488 7 6 3.8875 2.7865 2.2080 8 6 3.4425 3.9621 1.3768 9 1 3.9983 4.2403 0.4936 10 6 2.3258 4.6826 1.7439 11 7 1.9165 5.6862 0.9989 12 14 1.3941 4.2334 3.2993 13 1 1.9754 4.9653 4.4533 14 1 -0.0351 4.6065 3.1456 15 1 1.5013 2.7712 3.5357 16 6 4.2086 3.0442 3.6815 17 6 5.3405 2.7703 2.6893 18 6 3.1561 -0.3411 -1.4014 19 6 4.6812 -0.2222 -1.4320 20 6 2.7489 -1.7722 -1.7574 21 1 -1.0500 -0.0002 0.0009 22 1 2.5437 2.0568 0.0136 23 1 3.8674 0.6324 2.2297 24 1 2.2550 1.3836 2.2953 25 1 1.1310 6.1933 1.2574 26 1 4.0979 4.0641 4.0497 27 1 3.9634 2.2576 4.3951 28 1 5.9746 3.6100 2.4048 29 1 5.8398 1.8032 2.7498 30 1 2.7233 0.3503 -2.1242 31 1 5.0402 -0.4119 -2.4435 32 1 4.9736 0.7820 -1.1249 33 1 5.1163 -0.9520 -0.7491 34 1 1.6624 -1.8570 -1.7356 35 1 3.1127 -2.0159 -2.7556 36 1 3.1818 -2.4637 -1.0344 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300998031.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:48 Heat of formation + Delta-G solvation = 68.847427 kcal Electronic energy + Delta-G solvation = -15309.818039 eV Core-core repulsion = 12989.001811 eV Total energy + Delta-G solvation = -2320.816228 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.00526 -36.54594 -32.93446 -32.05276 -31.82363 -26.90636 -26.76082 -25.32371 -23.16649 -21.54294 -20.26104 -18.95560 -17.99427 -16.18201 -15.09027 -14.92836 -14.88525 -14.20673 -13.82548 -13.53996 -12.73166 -12.52497 -12.38690 -12.06709 -11.79809 -11.73196 -11.20234 -11.06900 -10.74146 -10.64853 -10.51077 -10.40672 -10.19201 -10.00420 -9.74543 -9.41432 -8.98921 -8.60762 -8.41065 -7.65110 -6.07795 -4.08940 3.12659 3.14073 3.30037 3.39354 3.44256 4.44468 4.62279 4.72156 5.07865 5.22535 5.24496 5.33442 5.58595 5.74894 5.85722 5.90975 6.00418 6.05346 6.13232 6.16811 6.22771 6.32841 6.35885 6.38233 6.54294 6.57891 6.63403 6.80030 6.85964 7.06268 7.19422 7.76782 7.85267 7.92933 8.20626 8.59001 8.99789 9.56104 11.03738 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.026667 B = 0.009636 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.723114 B = 2905.218707 C = 3312.085371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.198 4.198 3 C 0.190 3.810 4 H 0.087 0.913 5 N -0.653 5.653 6 C 0.094 3.906 7 C 0.010 3.990 8 C -0.476 4.476 9 H 0.081 0.919 10 C 0.075 3.925 11 N -0.898 5.898 12 Si 0.877 3.123 13 H -0.280 1.280 14 H -0.298 1.298 15 H -0.260 1.260 16 C -0.210 4.210 17 C -0.174 4.174 18 C -0.077 4.077 19 C -0.136 4.136 20 C -0.147 4.147 21 H 0.211 0.789 22 H 0.363 0.637 23 H 0.049 0.951 24 H 0.022 0.978 25 H 0.263 0.737 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 -12.331 -1.538 12.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.200 4.200 3 C 0.080 3.920 4 H 0.104 0.896 5 N -0.284 5.284 6 C -0.035 4.035 7 C 0.008 3.992 8 C -0.513 4.513 9 H 0.099 0.901 10 C -0.127 4.127 11 N -0.536 5.536 12 Si 0.705 3.295 13 H -0.206 1.206 14 H -0.225 1.225 15 H -0.185 1.185 16 C -0.248 4.248 17 C -0.212 4.212 18 C -0.096 4.096 19 C -0.194 4.194 20 C -0.204 4.204 21 H 0.228 0.772 22 H 0.185 0.815 23 H 0.067 0.933 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.419 -12.315 -1.646 12.506 hybrid contribution -1.891 -0.005 1.273 2.280 sum -0.472 -12.320 -0.373 12.335 Atomic orbital electron populations 1.24881 0.95944 1.01175 1.01735 1.24621 0.95842 1.00005 0.99528 1.18961 0.81229 0.94320 0.97479 0.89555 1.60705 1.54410 1.01693 1.11571 1.21665 0.97813 0.96796 0.87239 1.19366 0.93770 0.94492 0.91529 1.20256 1.11151 1.09260 1.10676 0.90066 1.24989 0.96761 0.94541 0.96415 1.69896 1.25160 1.20254 1.38278 0.86922 0.78304 0.79914 0.84331 1.20574 1.22500 1.18462 1.22986 1.06598 1.00880 0.94302 1.22807 0.92666 1.00498 1.05179 1.20996 0.97071 0.96269 0.95267 1.21698 0.93854 1.03776 1.00030 1.21859 1.01094 0.96481 1.00999 0.77225 0.81474 0.93297 0.95989 0.92714 0.89628 0.91294 0.89788 0.91099 0.91070 0.93805 0.90038 0.93587 0.92979 0.92730 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.46 19.25 29.55 0.57 -2.89 16 2 C -0.20 -3.39 11.45 -37.12 -0.42 -3.82 16 3 C 0.19 3.13 2.05 -70.50 -0.14 2.98 16 4 H 0.09 1.35 7.68 -51.93 -0.40 0.95 16 5 N -0.65 -12.75 4.97 -109.70 -0.55 -13.29 16 6 C 0.09 1.95 5.49 -3.82 -0.02 1.93 16 7 C 0.01 0.22 1.22 -155.63 -0.19 0.03 16 8 C -0.48 -12.85 8.09 -34.44 -0.28 -13.13 16 9 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 10 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 12 Si 0.88 21.85 24.93 -169.99 -4.24 17.62 16 13 H -0.28 -6.90 7.10 56.52 0.40 -6.49 16 14 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 15 H -0.26 -6.24 5.53 56.52 0.31 -5.93 16 16 C -0.21 -4.52 7.50 -26.74 -0.20 -4.72 16 17 C -0.17 -3.58 9.88 -26.70 -0.26 -3.84 16 18 C -0.08 -1.09 2.65 -90.62 -0.24 -1.33 16 19 C -0.14 -1.86 9.04 37.16 0.34 -1.53 16 20 C -0.15 -1.75 9.00 37.16 0.33 -1.42 16 21 H 0.21 2.57 7.80 -54.09 -0.42 2.14 16 22 H 0.36 8.05 7.41 -39.29 -0.29 7.76 16 23 H 0.05 0.92 7.72 -51.93 -0.40 0.52 16 24 H 0.02 0.49 6.60 -51.93 -0.34 0.15 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.09 1.95 7.01 -51.93 -0.36 1.58 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 29 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 30 H 0.07 1.08 8.14 -51.94 -0.42 0.66 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.30 7.37 -51.93 -0.38 0.91 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.64 7.38 -51.93 -0.38 0.26 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 295.08 15.07 4.45 4.45 Total: -1.00 -28.67 295.08 -6.20 -34.86 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.01 Total: 8.25 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -0.62 Total: -25.73 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.23 Total: -39.44 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.24 Total: 17.62 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.67 -6.20 -34.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300998031.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.710 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds