Wall clock time and date at job start Mon Mar 30 2020 02:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47006 * 316.28638 * 3 2 1 5 5 N 1.46901 * 109.47164 * 196.28836 * 3 2 1 6 6 C 1.46904 * 111.00285 * 87.20417 * 5 3 2 7 7 C 1.53002 * 109.47041 * 174.45936 * 6 5 3 8 8 C 1.50696 * 115.56130 * 39.71112 * 7 6 5 9 9 H 1.07995 * 120.00320 * 267.53729 * 8 7 6 10 10 C 1.37877 * 119.99854 * 87.54016 * 8 7 6 11 11 N 1.31515 * 120.00269 * 181.83143 * 10 8 7 12 12 Si 1.86796 * 120.00147 * 1.83053 * 10 8 7 13 13 H 1.48495 * 109.47220 * 88.64798 * 12 10 8 14 14 H 1.48505 * 109.47331 * 208.65146 * 12 10 8 15 15 H 1.48504 * 109.46950 * 328.64874 * 12 10 8 16 16 C 1.52998 * 117.49540 * 185.40380 * 7 6 5 17 17 C 1.52994 * 60.03111 * 107.47535 * 16 7 6 18 18 C 1.53002 * 109.47063 * 76.28764 * 3 2 1 19 19 C 1.53005 * 109.46925 * 175.14607 * 18 3 2 20 20 C 1.52998 * 109.46755 * 295.14293 * 18 3 2 21 21 H 4.18733 * 15.03924 * 359.97438 * 4 2 1 22 22 H 1.00900 * 110.99599 * 323.24803 * 5 3 2 23 23 H 1.09005 * 109.46779 * 54.45878 * 6 5 3 24 24 H 1.08994 * 109.46802 * 294.45997 * 6 5 3 25 25 H 0.97001 * 120.00459 * 180.02562 * 11 10 8 26 26 H 1.09001 * 117.49331 * 214.97857 * 16 7 6 27 27 H 1.08998 * 117.50194 * 359.96888 * 16 7 6 28 28 H 1.09006 * 117.49727 * 107.50187 * 17 16 7 29 29 H 1.09004 * 117.49878 * 252.51548 * 17 16 7 30 30 H 1.08987 * 109.47274 * 55.14415 * 18 3 2 31 31 H 1.08999 * 109.47049 * 183.09518 * 19 18 3 32 32 H 1.08999 * 109.46896 * 303.09983 * 19 18 3 33 33 H 1.09005 * 109.46825 * 63.09513 * 19 18 3 34 34 H 1.08998 * 109.47469 * 60.00207 * 20 18 3 35 35 H 1.09004 * 109.46947 * 180.02562 * 20 18 3 36 36 H 1.09004 * 109.47235 * 300.00179 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.7420 0.7102 5 7 3.1351 1.3303 0.3885 6 6 3.2475 1.4440 1.8488 7 6 3.8875 2.7865 2.2080 8 6 3.4425 3.9621 1.3768 9 1 3.9983 4.2403 0.4936 10 6 2.3258 4.6826 1.7439 11 7 1.9165 5.6862 0.9989 12 14 1.3941 4.2334 3.2993 13 1 1.9754 4.9653 4.4533 14 1 -0.0351 4.6065 3.1456 15 1 1.5013 2.7712 3.5357 16 6 4.2086 3.0442 3.6815 17 6 5.3405 2.7703 2.6893 18 6 3.1561 -0.3411 -1.4014 19 6 4.6812 -0.2222 -1.4320 20 6 2.7489 -1.7722 -1.7574 21 1 -1.0500 -0.0002 0.0009 22 1 2.5437 2.0568 0.0136 23 1 3.8674 0.6324 2.2297 24 1 2.2550 1.3836 2.2953 25 1 1.1310 6.1933 1.2574 26 1 4.0979 4.0641 4.0497 27 1 3.9634 2.2576 4.3951 28 1 5.9746 3.6100 2.4048 29 1 5.8398 1.8032 2.7498 30 1 2.7233 0.3503 -2.1242 31 1 5.0402 -0.4119 -2.4435 32 1 4.9736 0.7820 -1.1249 33 1 5.1163 -0.9520 -0.7491 34 1 1.6624 -1.8570 -1.7356 35 1 3.1127 -2.0159 -2.7556 36 1 3.1818 -2.4637 -1.0344 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300998031.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:48 Heat of formation + Delta-G solvation = 51.565279 kcal Electronic energy + Delta-G solvation = -15310.567450 eV Core-core repulsion = 12989.001811 eV Total energy + Delta-G solvation = -2321.565638 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.48605 -38.07202 -34.26057 -34.16139 -33.14627 -28.43425 -27.82802 -27.25347 -24.63390 -23.23459 -21.46422 -20.74932 -19.29232 -18.14796 -16.83073 -16.46447 -16.20942 -15.69326 -15.17743 -15.05731 -14.75171 -14.09282 -13.81819 -13.32339 -13.19940 -13.01698 -12.82377 -12.68151 -12.29298 -12.09661 -11.94231 -11.78706 -11.62307 -11.53495 -11.31288 -10.94060 -10.92298 -10.57650 -10.22273 -9.20011 -8.25648 -6.28915 1.31895 1.35462 1.46241 1.84249 1.87569 2.36682 3.07753 3.17513 3.43321 3.57715 4.08555 4.15990 4.21263 4.41731 4.45980 4.49883 4.64987 4.73516 4.82933 4.88978 4.89650 4.94752 5.03791 5.13714 5.14407 5.21169 5.31108 5.34355 5.51245 5.53047 5.71855 5.77688 6.28046 6.43414 6.53588 6.67869 6.81594 7.38473 8.89679 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.026667 B = 0.009636 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.723114 B = 2905.218707 C = 3312.085371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.235 4.235 3 C 0.190 3.810 4 H 0.099 0.901 5 N -0.658 5.658 6 C 0.103 3.897 7 C -0.019 4.019 8 C -0.463 4.463 9 H 0.036 0.964 10 C 0.022 3.978 11 N -0.948 5.948 12 Si 0.932 3.068 13 H -0.273 1.273 14 H -0.305 1.305 15 H -0.240 1.240 16 C -0.205 4.205 17 C -0.157 4.157 18 C -0.074 4.074 19 C -0.131 4.131 20 C -0.139 4.139 21 H 0.241 0.759 22 H 0.343 0.657 23 H 0.076 0.924 24 H 0.007 0.993 25 H 0.262 0.738 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.039 -14.922 -0.371 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.237 4.237 3 C 0.081 3.919 4 H 0.116 0.884 5 N -0.287 5.287 6 C -0.026 4.026 7 C -0.020 4.020 8 C -0.501 4.501 9 H 0.054 0.946 10 C -0.175 4.175 11 N -0.588 5.588 12 Si 0.759 3.241 13 H -0.199 1.199 14 H -0.232 1.232 15 H -0.164 1.164 16 C -0.243 4.243 17 C -0.194 4.194 18 C -0.094 4.094 19 C -0.188 4.188 20 C -0.197 4.197 21 H 0.257 0.743 22 H 0.162 0.838 23 H 0.094 0.906 24 H 0.025 0.975 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.627 -14.942 -0.470 15.038 hybrid contribution -1.894 0.807 0.817 2.215 sum -0.267 -14.135 0.347 14.141 Atomic orbital electron populations 1.25711 0.96938 0.99658 1.00509 1.24930 0.96593 1.01374 1.00779 1.19077 0.81344 0.92664 0.98832 0.88367 1.60709 1.54395 1.02669 1.10886 1.21562 0.97149 0.96066 0.87836 1.19355 0.96264 0.94050 0.92304 1.20328 1.10056 1.10263 1.09429 0.94551 1.25702 0.97913 0.94563 0.99334 1.70039 1.26157 1.22140 1.40485 0.86017 0.76495 0.80746 0.80861 1.19880 1.23227 1.16366 1.23015 1.06532 1.01010 0.93733 1.22847 0.91457 1.01814 1.03294 1.20986 0.97275 0.97480 0.93610 1.21631 0.93459 1.02427 1.01291 1.21791 1.00853 0.94789 1.02230 0.74304 0.83805 0.90558 0.97509 0.92908 0.91207 0.88435 0.90815 0.87785 0.92846 0.92221 0.92797 0.92308 0.93491 0.91183 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.27 19.25 74.32 1.43 -4.84 16 2 C -0.23 -7.76 11.45 31.13 0.36 -7.40 16 3 C 0.19 6.01 2.05 43.11 0.09 6.09 16 4 H 0.10 2.83 7.68 -2.39 -0.02 2.81 16 5 N -0.66 -25.45 4.97 -500.99 -2.49 -27.94 16 6 C 0.10 4.08 5.49 86.30 0.47 4.55 16 7 C -0.02 -0.83 1.22 -52.91 -0.06 -0.90 16 8 C -0.46 -25.59 8.09 25.60 0.21 -25.38 16 9 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 10 C 0.02 1.25 5.47 84.65 0.46 1.72 16 11 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 12 Si 0.93 45.04 24.93 68.60 1.71 46.75 16 13 H -0.27 -12.81 7.10 99.48 0.71 -12.11 16 14 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 15 H -0.24 -10.75 5.53 99.48 0.55 -10.20 16 16 C -0.21 -8.28 7.50 30.59 0.23 -8.05 16 17 C -0.16 -6.07 9.88 30.61 0.30 -5.77 16 18 C -0.07 -2.03 2.65 -10.79 -0.03 -2.05 16 19 C -0.13 -3.37 9.04 71.98 0.65 -2.72 16 20 C -0.14 -2.99 9.00 71.98 0.65 -2.34 16 21 H 0.24 5.22 7.80 -4.42 -0.03 5.18 16 22 H 0.34 15.61 7.41 -89.69 -0.66 14.94 16 23 H 0.08 2.59 7.72 -2.38 -0.02 2.57 16 24 H 0.01 0.29 6.60 -2.39 -0.02 0.27 16 25 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.07 3.04 7.01 -2.39 -0.02 3.02 16 27 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 28 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 29 H 0.10 3.35 8.08 -2.38 -0.02 3.33 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.69 7.37 -2.39 -0.02 1.67 16 33 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.05 1.06 7.38 -2.39 -0.02 1.04 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -63.02 295.08 4.48 -58.54 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.21 Total: 28.31 kcal Atomic # 6 Polarization: -51.84 SS G_CDS: 4.76 Total: -47.09 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -2.19 Total: -86.51 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.71 Total: 46.75 kcal Total: -63.02 4.48 -58.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300998031.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.102 kcal (2) G-P(sol) polarization free energy of solvation -63.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds