Wall clock time and date at job start Mon Mar 30 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39966 * 120.91532 * 173.89393 * 3 2 1 5 5 N 1.32028 * 119.07732 * 179.73213 * 4 3 2 6 6 C 1.32757 * 121.11621 * 0.49818 * 5 4 3 7 7 S 1.76205 * 118.97464 * 179.75872 * 6 5 4 8 8 C 1.76199 * 99.99765 * 359.73425 * 7 6 5 9 9 H 1.08009 * 120.00150 * 359.72076 * 8 7 6 10 10 C 1.38840 * 120.00025 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99928 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00141 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47483 * 89.99571 * 12 10 8 14 14 H 1.48502 * 109.47495 * 210.00084 * 12 10 8 15 15 H 1.48507 * 109.46904 * 329.99908 * 12 10 8 16 16 N 1.32558 * 122.05470 * 359.48404 * 6 5 4 17 17 C 1.32724 * 120.77784 * 0.25692 * 16 6 5 18 18 N 1.38022 * 120.59155 * 179.97438 * 17 16 6 19 19 H 1.07997 * 120.46669 * 359.97264 * 4 3 2 20 20 H 0.97005 * 120.00032 * 180.02562 * 11 10 8 21 21 H 0.96999 * 120.00021 * 359.97438 * 18 17 16 22 22 H 0.97002 * 120.00134 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2866 1.1950 -0.1277 5 7 4.6062 1.1540 -0.1179 6 6 5.2560 0.0025 0.0008 7 16 7.0180 0.0127 0.0010 8 6 7.3139 1.7397 -0.1843 9 1 6.4825 2.4247 -0.2630 10 6 8.6158 2.2196 -0.2344 11 7 9.6281 1.3851 -0.1430 12 14 8.9295 4.0506 -0.4301 13 1 9.0112 4.6849 0.9102 14 1 10.2086 4.2591 -1.1552 15 1 7.8180 4.6636 -1.2009 16 7 4.6206 -1.1543 0.1246 17 6 3.2943 -1.2036 0.1294 18 7 2.6367 -2.4103 0.2580 19 1 2.7689 2.1373 -0.2290 20 1 10.5377 1.7203 -0.1777 21 1 3.1442 -3.2323 0.3456 22 1 1.6671 -2.4364 0.2607 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306174734.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:55 Heat of formation + Delta-G solvation = 65.463259 kcal Electronic energy + Delta-G solvation = -11786.983299 eV Core-core repulsion = 9468.140750 eV Total energy + Delta-G solvation = -2318.842549 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.027 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.13792 -36.33995 -35.18863 -32.90623 -32.22912 -30.22738 -25.98231 -24.73213 -23.14746 -18.77109 -18.68547 -17.85017 -17.19024 -15.34669 -15.10184 -14.83721 -14.69156 -13.57391 -13.20146 -13.03049 -13.01544 -12.44151 -11.63686 -11.56350 -11.25154 -11.20904 -10.48890 -10.04493 -9.90086 -9.32401 -9.09107 -8.49423 -8.25788 -7.09532 -6.65366 -4.35743 1.00721 1.98708 2.59981 2.91376 3.09921 3.15152 3.22516 3.32908 3.60799 3.88299 4.38056 4.41299 4.66182 4.82950 5.03720 5.32284 5.62136 5.89711 6.56701 7.07693 7.38830 7.41661 7.70015 7.99642 8.26532 8.75681 8.87289 10.41058 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.049709 B = 0.007376 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.143640 B = 3795.101347 C = 4348.402320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.286 3.714 3 C -0.279 4.279 4 C 0.247 3.753 5 N -0.548 5.548 6 C 0.308 3.692 7 S 0.223 5.777 8 C -0.550 4.550 9 H 0.116 0.884 10 C 0.077 3.923 11 N -0.866 5.866 12 Si 0.935 3.065 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.264 1.264 16 N -0.584 5.584 17 C 0.496 3.504 18 N -0.834 5.834 19 H 0.162 0.838 20 H 0.278 0.722 21 H 0.408 0.592 22 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 -2.999 0.300 7.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.028 4.028 3 C -0.302 4.302 4 C 0.068 3.932 5 N -0.268 5.268 6 C -0.058 4.058 7 S 0.473 5.527 8 C -0.699 4.699 9 H 0.134 0.866 10 C -0.134 4.134 11 N -0.499 5.499 12 Si 0.760 3.240 13 H -0.198 1.198 14 H -0.206 1.206 15 H -0.188 1.188 16 N -0.315 5.315 17 C 0.240 3.760 18 N -0.378 5.378 19 H 0.179 0.821 20 H 0.088 0.912 21 H 0.238 0.762 22 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.995 -3.876 0.398 7.150 hybrid contribution -1.422 1.638 -0.170 2.176 sum -7.417 -2.238 0.228 7.751 Atomic orbital electron populations 1.81210 1.11859 1.07630 1.13564 1.25291 0.92032 0.93555 0.91916 1.16712 0.85515 0.96225 1.31772 1.23034 0.89828 0.95651 0.84695 1.68981 1.07798 1.28125 1.21925 1.26205 1.04625 0.84514 0.90477 1.83751 0.82817 1.12011 1.74097 1.23755 0.96457 0.92733 1.56910 0.86599 1.25230 0.94592 1.00593 0.93010 1.69909 0.99769 1.35738 1.44482 0.85884 0.78093 0.81177 0.78878 1.19778 1.20584 1.18847 1.68199 1.05705 1.28990 1.28631 1.18247 0.88616 0.84957 0.84211 1.42046 1.09177 1.06081 1.80464 0.82106 0.91177 0.76165 0.76397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.46 18.54 41.84 0.78 -6.68 14 2 C 0.29 4.32 14.27 -22.47 -0.32 3.99 14 3 C -0.28 -4.44 5.80 -106.19 -0.62 -5.06 14 4 C 0.25 4.16 11.05 -16.82 -0.19 3.98 14 5 N -0.55 -11.40 8.41 -13.10 -0.11 -11.51 14 6 C 0.31 6.68 7.84 -90.66 -0.71 5.97 14 7 S 0.22 5.31 21.83 -107.50 -2.35 2.96 14 8 C -0.55 -14.11 9.24 30.95 0.29 -13.83 14 9 H 0.12 2.97 6.49 -52.48 -0.34 2.63 14 10 C 0.08 1.94 5.49 -17.47 -0.10 1.84 14 11 N -0.87 -22.72 13.22 55.49 0.73 -21.99 14 12 Si 0.93 19.65 29.55 -169.99 -5.02 14.63 14 13 H -0.27 -5.65 7.11 56.52 0.40 -5.25 14 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 14 15 H -0.26 -5.51 7.11 56.52 0.40 -5.11 14 16 N -0.58 -11.36 10.41 -12.38 -0.13 -11.48 14 17 C 0.50 8.10 7.83 -154.89 -1.21 6.89 14 18 N -0.83 -10.01 8.98 31.42 0.28 -9.73 14 19 H 0.16 2.15 8.06 -52.49 -0.42 1.73 14 20 H 0.28 6.78 8.31 -40.82 -0.34 6.44 14 21 H 0.41 4.19 8.95 -40.82 -0.37 3.82 14 22 H 0.41 4.19 7.78 -40.82 -0.32 3.87 14 LS Contribution 233.35 15.07 3.52 3.52 Total: -1.00 -27.98 233.35 -5.74 -33.71 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -0.58 Total: 2.78 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -2.86 Total: 3.79 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 1.55 Total: -61.39 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -2.35 Total: 2.96 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -27.98 -5.74 -33.71 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306174734.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.176 kcal (2) G-P(sol) polarization free energy of solvation -27.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds