Wall clock time and date at job start Mon Mar 30 2020 02:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.34558 * 123.87943 * 80.55709 * 3 2 1 5 5 S 1.70271 * 111.21009 * 179.97438 * 4 3 2 6 6 C 1.70284 * 93.19869 * 359.97438 * 5 4 3 7 7 C 1.34767 * 111.14733 * 359.71207 * 6 5 4 8 8 C 1.46997 * 123.90245 * 180.28753 * 7 6 5 9 9 O 1.21679 * 120.00113 * 180.21235 * 8 7 6 10 10 N 1.34773 * 119.99661 * 0.21902 * 8 7 6 11 11 C 1.36951 * 119.99402 * 179.97438 * 10 8 7 12 12 H 1.07996 * 120.00242 * 359.97438 * 11 10 8 13 13 C 1.38988 * 119.99718 * 179.97438 * 11 10 8 14 14 N 1.31411 * 120.00178 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00084 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46940 * 90.00177 * 15 13 11 17 17 H 1.48493 * 109.47342 * 210.00091 * 15 13 11 18 18 H 1.48498 * 109.47146 * 330.00365 * 15 13 11 19 19 H 1.08008 * 124.39013 * 0.02562 * 4 3 2 20 20 H 1.07997 * 124.42985 * 180.02562 * 6 5 4 21 21 H 0.96994 * 120.00316 * 359.97438 * 10 8 7 22 22 H 0.96993 * 120.00312 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3181 -0.1823 -1.1020 5 16 4.9794 -0.1196 -0.7337 6 6 4.6991 0.1569 0.9230 7 6 3.3793 0.2071 1.1910 8 6 2.8232 0.4385 2.5319 9 8 1.6176 0.4663 2.6941 10 7 3.6487 0.6201 3.5816 11 6 3.1306 0.8362 4.8308 12 1 2.0605 0.8616 4.9746 13 6 3.9819 1.0229 5.9134 14 7 5.2839 0.9926 5.7384 15 14 3.2752 1.3185 7.6172 16 1 3.0869 0.0172 8.3074 17 1 4.2109 2.1639 8.4014 18 1 1.9661 2.0091 7.4972 19 1 2.9183 -0.3467 -2.0918 20 1 5.4772 0.2812 1.6615 21 1 4.6098 0.5977 3.4524 22 1 5.8780 1.1233 6.4939 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306533002.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:33 Heat of formation + Delta-G solvation = 20.116191 kcal Electronic energy + Delta-G solvation = -12024.908657 eV Core-core repulsion = 9671.806960 eV Total energy + Delta-G solvation = -2353.101697 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.00569 -36.92980 -35.32581 -34.09324 -31.57488 -29.80435 -25.71943 -24.68871 -22.05967 -19.50834 -18.48668 -17.19369 -16.94010 -15.61494 -14.69942 -14.20407 -14.02267 -13.49829 -13.08543 -12.97944 -12.78498 -12.38093 -12.03318 -11.79835 -11.64368 -11.19210 -11.03606 -10.49302 -10.37250 -9.69708 -8.86886 -8.58374 -8.25351 -8.13346 -6.63836 -3.96436 0.90191 1.62725 1.81465 2.01320 3.12512 3.18422 3.22599 3.25486 3.81497 4.03303 4.27692 4.53189 4.67666 5.08757 5.20372 5.47301 5.78782 6.00452 6.18088 6.43087 7.36650 7.87874 8.03476 8.42001 8.98639 9.32627 9.88814 10.52786 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.037321 B = 0.008072 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.070327 B = 3468.102101 C = 4208.326866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.288 3.712 3 C -0.005 4.005 4 C -0.227 4.227 5 S 0.255 5.745 6 C -0.255 4.255 7 C -0.079 4.079 8 C 0.476 3.524 9 O -0.587 6.587 10 N -0.536 5.536 11 C -0.292 4.292 12 H 0.109 0.891 13 C 0.025 3.975 14 N -0.888 5.888 15 Si 0.936 3.064 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.267 1.267 19 H 0.174 0.826 20 H 0.177 0.823 21 H 0.394 0.606 22 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.974 -1.826 -10.704 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.029 4.029 3 C -0.024 4.024 4 C -0.368 4.368 5 S 0.522 5.478 6 C -0.393 4.393 7 C -0.096 4.096 8 C 0.262 3.738 9 O -0.474 6.474 10 N -0.170 5.170 11 C -0.422 4.422 12 H 0.127 0.873 13 C -0.179 4.179 14 N -0.528 5.528 15 Si 0.762 3.238 16 H -0.201 1.201 17 H -0.206 1.206 18 H -0.191 1.191 19 H 0.192 0.808 20 H 0.194 0.806 21 H 0.228 0.772 22 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.906 -1.910 -11.263 12.433 hybrid contribution -0.509 0.298 1.823 1.916 sum 4.396 -1.612 -9.440 10.538 Atomic orbital electron populations 1.81071 1.11867 1.08268 1.08127 1.24591 0.91566 0.93834 0.92934 1.15763 0.86163 1.07816 0.92613 1.25086 1.00113 1.08960 1.02616 1.81608 1.01081 1.65712 0.99391 1.25289 1.00146 1.11318 1.02589 1.20238 0.91402 1.02889 0.95029 1.17011 0.86946 0.86851 0.83011 1.90685 1.14063 1.58071 1.84559 1.41811 1.08798 1.59598 1.06748 1.19870 0.94847 1.44600 0.82846 0.87308 1.25388 0.95082 0.96772 1.00668 1.69596 1.02208 1.47736 1.33216 0.85758 0.78923 0.78608 0.80538 1.20078 1.20635 1.19121 0.80839 0.80599 0.77189 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.00 18.54 41.83 0.78 -8.23 14 2 C 0.29 5.73 13.96 -22.47 -0.31 5.42 14 3 C -0.01 -0.09 5.85 -106.34 -0.62 -0.71 14 4 C -0.23 -2.74 10.70 29.43 0.31 -2.43 14 5 S 0.25 2.61 22.77 -107.50 -2.45 0.16 14 6 C -0.25 -3.73 10.32 29.50 0.30 -3.43 14 7 C -0.08 -1.50 5.99 -104.65 -0.63 -2.12 14 8 C 0.48 11.65 7.74 -12.71 -0.10 11.55 14 9 O -0.59 -16.68 14.94 5.21 0.08 -16.60 14 10 N -0.54 -13.40 5.25 -12.07 -0.06 -13.46 14 11 C -0.29 -7.95 9.68 -14.99 -0.15 -8.10 14 12 H 0.11 3.13 7.15 -52.49 -0.38 2.76 14 13 C 0.02 0.63 5.50 -17.45 -0.10 0.54 14 14 N -0.89 -22.90 13.05 55.50 0.72 -22.17 14 15 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 14 16 H -0.28 -5.92 7.11 56.52 0.40 -5.52 14 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 14 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 14 19 H 0.17 1.53 8.06 -52.48 -0.42 1.11 14 20 H 0.18 2.42 7.02 -52.49 -0.37 2.05 14 21 H 0.39 9.11 6.42 -40.82 -0.26 8.84 14 22 H 0.28 6.70 8.31 -40.82 -0.34 6.36 14 LS Contribution 232.12 15.07 3.50 3.50 Total: -1.00 -31.85 232.12 -4.31 -36.15 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -0.56 Total: 4.62 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.28 Total: 0.72 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 1.44 Total: -43.87 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.08 Total: -16.60 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.45 Total: 0.16 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.85 -4.31 -36.15 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306533002.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.267 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds