Wall clock time and date at job start Mon Mar 30 2020 02:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86809 * 119.99832 * 2 1 4 4 H 1.48493 * 109.47059 * 269.99746 * 3 2 1 5 5 H 1.48490 * 109.47121 * 30.00177 * 3 2 1 6 6 H 1.48497 * 109.46976 * 150.00154 * 3 2 1 7 7 C 1.39908 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00320 * 197.40981 * 7 2 1 9 9 C 1.41044 * 119.99703 * 17.40964 * 7 2 1 10 10 C 1.41225 * 120.05749 * 25.54281 * 9 7 2 11 11 C 1.35743 * 120.44288 * 180.27817 * 10 9 7 12 12 C 1.40521 * 120.25456 * 359.45615 * 11 10 9 13 13 N 1.34814 * 133.21120 * 180.25641 * 12 11 10 14 14 C 1.30343 * 109.90017 * 180.02562 * 13 12 11 15 15 N 1.35894 * 110.11158 * 0.02562 * 14 13 12 16 16 H 0.97000 * 126.45150 * 180.02562 * 15 14 13 17 17 C 1.38347 * 107.09404 * 0.02562 * 15 14 13 18 18 C 1.38178 * 133.93448 * 179.97438 * 17 15 14 19 19 Cl 1.73600 * 120.27359 * 0.04513 * 18 17 15 20 20 H 0.97000 * 120.00168 * 359.97438 * 1 2 3 21 21 H 1.08003 * 119.77862 * 0.02562 * 10 9 7 22 22 H 1.08006 * 119.87149 * 179.73864 * 11 10 9 23 23 H 1.07997 * 124.94729 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4903 2.0465 -1.4000 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4403 0.7000 7 6 2.0084 -1.2116 0.0005 8 1 3.0512 -1.2329 0.2804 9 6 1.3516 -2.4053 -0.3644 10 6 0.2255 -2.3613 -1.2156 11 6 -0.4159 -3.5048 -1.5673 12 6 0.0420 -4.7469 -1.0962 13 7 -0.3789 -6.0149 -1.2771 14 6 0.3896 -6.8357 -0.6179 15 7 1.3607 -6.1445 0.0346 16 1 2.0585 -6.5200 0.5941 17 6 1.1668 -4.8045 -0.2493 18 6 1.8190 -3.6427 0.1169 19 17 3.2065 -3.7090 1.1581 20 1 -0.4850 0.8400 0.0004 21 1 -0.1301 -1.4111 -1.5860 22 1 -1.2787 -3.4600 -2.2154 23 1 0.2717 -7.9090 -0.5937 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306711955.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:36 Heat of formation + Delta-G solvation = 30.104004 kcal Electronic energy + Delta-G solvation = -12437.032523 eV Core-core repulsion = 10082.320224 eV Total energy + Delta-G solvation = -2354.712299 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.47620 -38.30417 -36.76553 -35.12361 -33.52594 -30.97085 -30.11464 -26.91992 -23.37153 -22.91295 -21.93859 -19.67638 -18.34503 -17.28929 -17.20974 -15.83221 -15.75807 -15.09578 -14.87335 -14.43659 -13.74177 -13.42034 -12.99640 -12.79851 -12.78166 -12.15512 -11.84421 -11.77962 -11.37245 -11.17208 -10.86013 -10.67442 -9.09750 -8.91109 -8.62811 -6.35992 0.46706 1.05274 1.41771 1.47802 1.55161 1.88346 2.13505 2.20075 2.40439 2.76752 3.56782 3.81411 4.25133 4.68177 4.81908 4.87613 4.96174 5.18442 5.47177 5.66122 5.78845 5.90192 6.13865 6.45777 6.72989 6.78241 6.87728 7.31717 8.21237 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.039066 B = 0.010486 C = 0.008454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.567181 B = 2669.595631 C = 3311.333387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.040 3.960 3 Si 0.984 3.016 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.088 0.912 9 C 0.111 3.889 10 C -0.141 4.141 11 C -0.072 4.072 12 C -0.069 4.069 13 N -0.521 5.521 14 C 0.217 3.783 15 N -0.600 5.600 16 H 0.428 0.572 17 C 0.093 3.907 18 C -0.197 4.197 19 Cl -0.106 7.106 20 H 0.296 0.704 21 H 0.126 0.874 22 H 0.116 0.884 23 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 -4.192 0.687 5.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.487 4.487 8 H 0.106 0.894 9 C 0.106 3.894 10 C -0.162 4.162 11 C -0.092 4.092 12 C -0.186 4.186 13 N -0.241 5.241 14 C -0.068 4.068 15 N -0.214 5.214 16 H 0.268 0.732 17 C -0.018 4.018 18 C -0.229 4.229 19 Cl -0.078 7.078 20 H 0.107 0.893 21 H 0.143 0.857 22 H 0.134 0.866 23 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 2.254 -4.232 0.247 4.801 hybrid contribution 1.264 0.670 0.905 1.693 sum 3.518 -3.561 1.152 5.137 Atomic orbital electron populations 1.69857 1.09001 1.31491 1.32654 1.26821 0.95490 1.04619 0.90912 0.85155 0.79070 0.75529 0.79832 1.18241 1.19010 1.18333 1.19830 0.98619 0.91371 1.38859 0.89444 1.17521 0.91331 0.91182 0.89360 1.20948 0.97958 0.97245 1.00017 1.19933 0.99525 0.89699 1.00082 1.18725 0.99279 0.92684 1.07945 1.69770 1.29200 1.00123 1.25051 1.25789 0.86944 1.00207 0.93897 1.42933 1.29519 1.04203 1.44729 0.73191 1.18465 0.98231 0.84790 1.00330 1.19465 0.99677 0.92090 1.11693 1.98162 1.43563 1.98631 1.67461 0.89297 0.85658 0.86566 0.72795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.13 10.98 21.82 0.24 -38.89 14 2 C 0.04 1.86 5.13 85.24 0.44 2.30 14 3 Si 0.98 35.77 29.59 68.60 2.03 37.80 14 4 H -0.26 -9.05 7.11 99.48 0.71 -8.34 14 5 H -0.27 -9.16 7.11 99.48 0.71 -8.45 14 6 H -0.26 -9.38 7.11 99.48 0.71 -8.67 14 7 C -0.46 -23.33 8.50 23.36 0.20 -23.14 14 8 H 0.09 4.37 7.10 -2.91 -0.02 4.35 14 9 C 0.11 5.80 5.57 -21.24 -0.12 5.68 14 10 C -0.14 -7.20 8.59 22.43 0.19 -7.00 14 11 C -0.07 -3.51 10.02 22.25 0.22 -3.29 14 12 C -0.07 -3.31 7.22 39.90 0.29 -3.02 14 13 N -0.52 -22.00 11.23 -191.72 -2.15 -24.15 14 14 C 0.22 6.94 12.97 180.03 2.33 9.28 14 15 N -0.60 -20.78 6.25 -191.03 -1.19 -21.97 14 16 H 0.43 11.80 8.96 -92.71 -0.83 10.97 14 17 C 0.09 4.25 7.07 38.76 0.27 4.52 14 18 C -0.20 -9.61 6.38 22.87 0.15 -9.46 14 19 Cl -0.11 -4.51 27.59 -2.72 -0.08 -4.59 14 20 H 0.30 12.83 8.30 -92.71 -0.77 12.07 14 21 H 0.13 6.41 6.18 -2.91 -0.02 6.39 14 22 H 0.12 5.13 8.06 -2.91 -0.02 5.11 14 23 H 0.26 4.74 8.06 -2.91 -0.02 4.71 14 Total: -1.00 -61.06 225.08 3.26 -57.80 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.43 Total: 18.13 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 3.98 Total: -24.13 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -3.11 Total: -85.01 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Atomic # 17 Polarization: -4.51 SS G_CDS: -0.08 Total: -4.59 kcal Total: -61.06 3.26 -57.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306711955.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.904 kcal (2) G-P(sol) polarization free energy of solvation -61.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds