Wall clock time and date at job start Mon Mar 30 2020 02:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48499 * 109.47191 * 239.99787 * 3 2 1 5 5 H 1.48499 * 109.46818 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46770 * 119.99787 * 3 2 1 7 7 C 1.39847 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00112 * 161.58037 * 7 2 1 9 9 C 1.41204 * 120.00113 * 341.58454 * 7 2 1 10 10 C 1.40900 * 120.36141 * 155.99542 * 9 7 2 11 11 C 1.36133 * 120.12552 * 180.68613 * 10 9 7 12 12 C 1.39988 * 121.03649 * 0.20564 * 11 10 9 13 13 C 1.39744 * 119.25891 * 358.79989 * 12 11 10 14 14 C 1.38244 * 120.34615 * 1.28593 * 13 12 11 15 15 S 1.76601 * 120.84726 * 181.38913 * 13 12 11 16 16 C 1.81928 * 101.91396 * 346.05131 * 15 13 12 17 17 C 1.53708 * 107.18500 * 44.19214 * 16 15 13 18 18 O 1.35108 * 117.29710 * 178.60200 * 12 11 10 19 19 H 0.97001 * 119.99785 * 0.02562 * 1 2 3 20 20 H 1.08000 * 119.93826 * 0.71167 * 10 9 7 21 21 H 1.07997 * 119.47823 * 179.97438 * 11 10 9 22 22 H 1.07998 * 120.02908 * 179.59298 * 14 13 12 23 23 H 1.09006 * 109.91062 * 163.60832 * 16 15 13 24 24 H 1.09001 * 109.91678 * 284.76858 * 16 15 13 25 25 H 1.09005 * 109.55385 * 52.74392 * 17 16 15 26 26 H 1.08997 * 109.55445 * 173.04440 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2781 2.7464 -0.0006 6 1 3.0968 1.6963 1.2126 7 6 2.0083 -1.2111 0.0005 8 1 3.0467 -1.2352 -0.2950 9 6 1.3565 -2.4025 0.3874 10 6 1.8296 -3.6513 -0.0619 11 6 1.1893 -4.7960 0.3026 12 6 0.0542 -4.7587 1.1210 13 6 -0.4104 -3.5265 1.5889 14 6 0.2284 -2.3556 1.2254 15 16 -1.8166 -3.4338 2.6532 16 6 -2.5251 -5.1011 2.4856 17 6 -1.3589 -6.0996 2.5595 18 8 -0.5386 -5.9373 1.4124 19 1 -0.4850 0.8401 -0.0004 20 1 2.7022 -3.7006 -0.6964 21 1 1.5607 -5.7475 -0.0481 22 1 -0.1390 -1.4057 1.5847 23 1 -3.2272 -5.2894 3.2978 24 1 -3.0330 -5.1939 1.5256 25 1 -0.7717 -5.9089 3.4578 26 1 -1.7505 -7.1165 2.5870 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306755360.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:44 Heat of formation + Delta-G solvation = -22.166933 kcal Electronic energy + Delta-G solvation = -12689.443296 eV Core-core repulsion = 10438.048409 eV Total energy + Delta-G solvation = -2251.394887 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.88738 -36.64755 -33.51185 -31.08355 -29.75760 -29.09358 -25.42568 -23.04333 -21.51743 -20.57672 -17.65963 -16.99387 -16.21628 -15.43295 -15.05413 -14.71692 -13.71659 -13.25009 -12.99989 -12.72390 -12.33155 -12.15980 -11.52222 -11.46099 -11.17775 -11.10082 -10.74880 -10.16663 -9.94761 -9.83266 -9.20677 -9.12568 -8.58044 -7.21040 -6.85014 -6.52076 -4.35229 2.17195 2.59629 2.80792 3.05819 3.07283 3.11827 3.14796 3.90427 4.02900 4.49907 4.93160 5.30050 5.39558 5.52653 5.68993 5.97006 6.08465 6.55149 6.64267 6.92053 7.15234 7.22440 7.39779 7.64257 7.85147 8.03711 8.38714 8.53334 8.79932 8.86447 10.14068 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.044856 B = 0.009008 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.069267 B = 3107.462927 C = 3629.160535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.101 3.899 10 C -0.192 4.192 11 C -0.097 4.097 12 C -0.012 4.012 13 C -0.112 4.112 14 C -0.120 4.120 15 S -0.159 6.159 16 C -0.143 4.143 17 C 0.070 3.930 18 O -0.331 6.331 19 H 0.283 0.717 20 H 0.104 0.896 21 H 0.101 0.899 22 H 0.129 0.871 23 H 0.109 0.891 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 -4.800 3.632 6.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.213 4.213 11 C -0.118 4.118 12 C -0.060 4.060 13 C -0.224 4.224 14 C -0.144 4.144 15 S 0.080 5.920 16 C -0.291 4.291 17 C -0.008 4.008 18 O -0.247 6.247 19 H 0.094 0.906 20 H 0.122 0.878 21 H 0.119 0.881 22 H 0.147 0.853 23 H 0.127 0.873 24 H 0.111 0.889 25 H 0.078 0.922 26 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.975 -3.910 4.224 6.479 hybrid contribution 0.529 -0.035 -0.616 0.813 sum -2.446 -3.944 3.608 5.878 Atomic orbital electron populations 1.69841 1.07572 1.29596 1.34427 1.25929 0.94746 1.01442 0.92286 0.86340 0.80136 0.80114 0.80023 1.18941 1.20290 1.18752 1.19439 0.98431 0.91129 1.39706 0.90078 1.17475 0.91210 0.92344 0.89323 1.20617 1.02922 0.92232 1.05537 1.19823 0.93453 0.97880 1.00599 1.18172 0.97776 0.82134 1.07938 1.21194 0.99395 0.96048 1.05790 1.20909 0.98817 0.94833 0.99843 1.85331 1.30488 1.17295 1.58840 1.24301 1.01445 0.97033 1.06351 1.22695 0.90321 0.98765 0.88973 1.85168 1.63469 1.32635 1.43441 0.90588 0.87787 0.88082 0.85292 0.87269 0.88942 0.92199 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.48 10.98 55.54 0.61 -19.87 15 2 C 0.07 1.85 5.13 -17.34 -0.09 1.76 15 3 Si 0.91 18.47 29.60 -169.99 -5.03 13.44 15 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 7 C -0.46 -11.94 9.05 -37.85 -0.34 -12.28 15 8 H 0.08 2.00 7.91 -52.49 -0.42 1.59 15 9 C 0.10 2.69 5.57 -106.87 -0.60 2.09 15 10 C -0.19 -4.68 9.73 -39.33 -0.38 -5.06 15 11 C -0.10 -2.26 9.81 -39.68 -0.39 -2.65 15 12 C -0.01 -0.29 6.56 -38.36 -0.25 -0.54 15 13 C -0.11 -2.75 6.06 -39.02 -0.24 -2.99 15 14 C -0.12 -3.19 8.36 -38.68 -0.32 -3.51 15 15 S -0.16 -3.29 22.18 -107.50 -2.38 -5.67 15 16 C -0.14 -2.28 6.77 37.53 0.25 -2.03 15 17 C 0.07 1.13 6.88 37.53 0.26 1.39 15 18 O -0.33 -6.91 9.84 -17.02 -0.17 -7.08 15 19 H 0.28 6.72 8.30 -40.82 -0.34 6.38 15 20 H 0.10 2.30 8.06 -52.49 -0.42 1.88 15 21 H 0.10 2.08 8.06 -52.49 -0.42 1.66 15 22 H 0.13 3.57 6.17 -52.49 -0.32 3.25 15 23 H 0.11 1.36 8.14 -51.93 -0.42 0.93 15 24 H 0.09 1.50 8.14 -51.93 -0.42 1.08 15 25 H 0.06 0.96 8.12 -51.93 -0.42 0.54 15 26 H 0.10 1.27 8.14 -51.93 -0.42 0.85 15 LS Contribution 238.86 15.07 3.60 3.60 Total: -1.00 -28.27 238.86 -7.88 -36.15 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -2.41 Total: 3.25 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -2.10 Total: -23.82 kcal Atomic # 7 Polarization: -20.48 SS G_CDS: 0.61 Total: -19.87 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.17 Total: -7.08 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.38 Total: -5.67 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.27 -7.88 -36.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306755360.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.988 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds