Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21339 * 119.99832 * 2 1 4 4 C 1.46606 * 119.99657 * 179.97438 * 2 1 3 5 5 C 1.40024 * 120.25472 * 0.02562 * 4 2 1 6 6 C 1.37663 * 119.91061 * 179.97438 * 5 4 2 7 7 C 1.38760 * 120.42770 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.50939 * 0.02562 * 7 6 5 9 9 C 1.39122 * 120.07585 * 0.02562 * 8 7 6 10 10 S 1.76202 * 120.20853 * 179.97438 * 9 8 7 11 11 C 1.76198 * 100.00072 * 6.84706 * 10 9 8 12 12 H 1.08002 * 120.00373 * 5.66179 * 11 10 9 13 13 C 1.38871 * 119.99797 * 185.65687 * 11 10 9 14 14 N 1.31509 * 119.99892 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99904 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.46781 * 90.00097 * 15 13 11 17 17 H 1.48501 * 109.47027 * 210.00024 * 15 13 11 18 18 H 1.48496 * 109.47185 * 330.00370 * 15 13 11 19 19 H 1.09006 * 109.47325 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47241 * 299.99948 * 1 2 3 21 21 H 1.09005 * 109.47058 * 60.00462 * 1 2 3 22 22 H 1.08001 * 120.04496 * 359.95944 * 5 4 2 23 23 H 1.08005 * 119.78648 * 180.02562 * 6 5 4 24 24 H 1.08000 * 119.74250 * 179.74415 * 7 6 5 25 25 H 1.08003 * 119.95913 * 179.97438 * 8 7 6 26 26 H 0.96996 * 120.00314 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2400 -1.2697 0.0006 5 6 1.5452 -2.4854 0.0006 6 6 2.2406 -3.6735 0.0006 7 6 3.6282 -3.6756 0.0000 8 6 4.3300 -2.4887 0.0000 9 6 3.6485 -1.2758 0.0011 10 16 4.5419 0.2430 0.0018 11 6 6.1819 -0.3666 -0.2061 12 1 6.3487 -1.4192 -0.3812 13 6 7.2601 0.5065 -0.1450 14 7 8.4842 0.0516 -0.3007 15 14 6.9717 2.3270 0.1584 16 1 6.9910 2.5945 1.6190 17 1 8.0425 3.1148 -0.5034 18 1 5.6523 2.7188 -0.3992 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 0.4652 -2.4910 0.0008 23 1 1.7026 -4.6100 0.0002 24 1 4.1625 -4.6141 0.0042 25 1 5.4099 -2.5007 0.0000 26 1 9.2373 0.6613 -0.2576 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306826338.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = -12.443018 kcal Electronic energy + Delta-G solvation = -12414.107962 eV Core-core repulsion = 10163.134735 eV Total energy + Delta-G solvation = -2250.973226 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.23023 -37.37756 -32.77250 -31.57451 -30.39081 -28.87370 -25.95737 -23.24040 -21.99156 -19.60245 -17.90289 -16.73132 -15.62490 -15.11052 -14.92733 -14.52858 -14.07732 -13.65964 -13.48786 -12.87181 -12.38227 -11.95052 -11.79835 -11.63912 -11.33220 -11.22617 -10.93596 -10.52589 -9.76966 -9.60074 -9.49461 -8.87844 -8.42445 -8.23118 -6.88601 -6.53290 -4.25633 1.23576 1.92278 2.81961 2.99990 3.16822 3.32097 3.42053 4.10018 4.32327 4.52740 4.65113 4.89878 5.17491 5.36920 5.50892 5.62666 5.68910 5.87241 6.04641 6.23705 6.30252 6.53886 6.78107 6.99907 7.04793 7.46196 7.69929 8.15165 8.29645 8.90090 10.53790 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.032651 B = 0.010821 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.337369 B = 2586.827106 C = 3421.185158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.375 3.625 3 O -0.447 6.447 4 C -0.203 4.203 5 C -0.056 4.056 6 C -0.181 4.181 7 C -0.074 4.074 8 C -0.147 4.147 9 C -0.034 4.034 10 S 0.082 5.918 11 C -0.579 4.579 12 H 0.107 0.893 13 C 0.104 3.896 14 N -0.860 5.860 15 Si 0.850 3.150 16 H -0.262 1.262 17 H -0.268 1.268 18 H -0.234 1.234 19 H 0.078 0.922 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.123 0.877 23 H 0.114 0.886 24 H 0.116 0.884 25 H 0.145 0.855 26 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.686 -3.679 0.832 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.254 3.746 3 O -0.325 6.325 4 C -0.215 4.215 5 C -0.076 4.076 6 C -0.204 4.204 7 C -0.096 4.096 8 C -0.172 4.172 9 C -0.152 4.152 10 S 0.344 5.656 11 C -0.725 4.725 12 H 0.124 0.876 13 C -0.108 4.108 14 N -0.493 5.493 15 Si 0.674 3.326 16 H -0.187 1.187 17 H -0.192 1.192 18 H -0.158 1.158 19 H 0.097 0.903 20 H 0.104 0.896 21 H 0.104 0.896 22 H 0.140 0.860 23 H 0.132 0.868 24 H 0.134 0.866 25 H 0.163 0.837 26 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.257 -1.657 0.922 12.403 hybrid contribution 0.606 -0.847 0.003 1.041 sum -11.651 -2.504 0.925 11.953 Atomic orbital electron populations 1.22163 0.94976 1.03984 1.04030 1.22159 0.91072 0.88080 0.73316 1.90526 1.70876 1.34033 1.37054 1.19880 0.92310 0.94691 1.14611 1.21166 0.98733 0.91541 0.96152 1.20785 0.94279 0.97311 1.08058 1.21182 0.94193 0.97539 0.96722 1.21587 1.01637 0.91069 1.02870 1.22750 0.95423 1.00008 0.97066 1.83980 1.00113 1.03389 1.78148 1.23501 0.91619 1.00331 1.57058 0.87556 1.24825 0.94073 0.99357 0.92516 1.69881 0.98358 1.36463 1.44600 0.86872 0.80983 0.84368 0.80413 1.18658 1.19239 1.15829 0.90323 0.89612 0.89611 0.85973 0.86757 0.86633 0.83722 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 10.19 36.01 0.37 -1.98 15 2 C 0.38 6.74 7.20 -30.93 -0.22 6.51 15 3 O -0.45 -9.73 14.53 5.51 0.08 -9.65 15 4 C -0.20 -3.85 5.89 -104.86 -0.62 -4.46 15 5 C -0.06 -0.86 9.44 -39.12 -0.37 -1.23 15 6 C -0.18 -2.70 10.02 -39.60 -0.40 -3.10 15 7 C -0.07 -1.26 10.02 -39.52 -0.40 -1.66 15 8 C -0.15 -3.10 9.22 -39.38 -0.36 -3.46 15 9 C -0.03 -0.76 6.16 -38.26 -0.24 -1.00 15 10 S 0.08 2.09 16.55 -107.50 -1.78 0.31 15 11 C -0.58 -16.26 9.54 30.97 0.30 -15.97 15 12 H 0.11 3.08 5.21 -52.49 -0.27 2.81 15 13 C 0.10 2.92 5.50 -17.46 -0.10 2.83 15 14 N -0.86 -24.94 13.96 55.49 0.77 -24.17 15 15 Si 0.85 20.76 27.74 -169.99 -4.72 16.04 15 16 H -0.26 -6.29 7.11 56.52 0.40 -5.89 15 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 18 H -0.23 -5.73 6.74 56.52 0.38 -5.35 15 19 H 0.08 0.76 5.60 -51.93 -0.29 0.47 15 20 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.09 0.94 8.14 -51.93 -0.42 0.51 15 22 H 0.12 1.38 5.92 -52.49 -0.31 1.07 15 23 H 0.11 1.33 8.06 -52.48 -0.42 0.91 15 24 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15 25 H 0.15 3.30 5.04 -52.48 -0.26 3.04 15 26 H 0.28 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 239.38 15.07 3.61 3.61 Total: -1.00 -30.83 239.38 -6.05 -36.89 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -1.99 Total: 0.47 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -2.03 Total: -23.51 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.77 Total: -24.17 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.72 Total: 16.04 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -1.78 Total: 0.31 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.83 -6.05 -36.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306826338.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.444 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds