Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21339 * 119.99832 * 2 1 4 4 C 1.46606 * 119.99657 * 179.97438 * 2 1 3 5 5 C 1.40024 * 120.25472 * 0.02562 * 4 2 1 6 6 C 1.37663 * 119.91061 * 179.97438 * 5 4 2 7 7 C 1.38760 * 120.42770 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.50939 * 0.02562 * 7 6 5 9 9 C 1.39122 * 120.07585 * 0.02562 * 8 7 6 10 10 S 1.76202 * 120.20853 * 179.97438 * 9 8 7 11 11 C 1.76198 * 100.00072 * 6.84706 * 10 9 8 12 12 H 1.08002 * 120.00373 * 5.66179 * 11 10 9 13 13 C 1.38871 * 119.99797 * 185.65687 * 11 10 9 14 14 N 1.31509 * 119.99892 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99904 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.46781 * 90.00097 * 15 13 11 17 17 H 1.48501 * 109.47027 * 210.00024 * 15 13 11 18 18 H 1.48496 * 109.47185 * 330.00370 * 15 13 11 19 19 H 1.09006 * 109.47325 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47241 * 299.99948 * 1 2 3 21 21 H 1.09005 * 109.47058 * 60.00462 * 1 2 3 22 22 H 1.08001 * 120.04496 * 359.95944 * 5 4 2 23 23 H 1.08005 * 119.78648 * 180.02562 * 6 5 4 24 24 H 1.08000 * 119.74250 * 179.74415 * 7 6 5 25 25 H 1.08003 * 119.95913 * 179.97438 * 8 7 6 26 26 H 0.96996 * 120.00314 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2400 -1.2697 0.0006 5 6 1.5452 -2.4854 0.0006 6 6 2.2406 -3.6735 0.0006 7 6 3.6282 -3.6756 0.0000 8 6 4.3300 -2.4887 0.0000 9 6 3.6485 -1.2758 0.0011 10 16 4.5419 0.2430 0.0018 11 6 6.1819 -0.3666 -0.2061 12 1 6.3487 -1.4192 -0.3812 13 6 7.2601 0.5065 -0.1450 14 7 8.4842 0.0516 -0.3007 15 14 6.9717 2.3270 0.1584 16 1 6.9910 2.5945 1.6190 17 1 8.0425 3.1148 -0.5034 18 1 5.6523 2.7188 -0.3992 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 0.4652 -2.4910 0.0008 23 1 1.7026 -4.6100 0.0002 24 1 4.1625 -4.6141 0.0042 25 1 5.4099 -2.5007 0.0000 26 1 9.2373 0.6613 -0.2576 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306826338.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = -32.675428 kcal Electronic energy + Delta-G solvation = -12414.985305 eV Core-core repulsion = 10163.134735 eV Total energy + Delta-G solvation = -2251.850570 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.69272 -38.85931 -34.86950 -32.96872 -31.85412 -30.06986 -28.02225 -24.65802 -23.42953 -21.16227 -19.66503 -18.28554 -17.41712 -16.76443 -16.43913 -15.88810 -15.60388 -15.22093 -14.99828 -14.57073 -13.76223 -13.70889 -13.16532 -13.14100 -12.85077 -12.78764 -12.53032 -12.21354 -11.53771 -11.40064 -11.24453 -10.60575 -9.97497 -9.86068 -8.74729 -8.63719 -6.37137 -0.19624 0.47777 0.97383 1.20955 1.37329 1.59195 1.60972 2.11936 2.58028 2.73463 2.93450 3.33326 3.95184 4.18047 4.29000 4.54400 4.59149 4.75106 4.75545 4.83132 5.16028 5.20035 5.41124 5.54540 5.60537 5.63175 6.06050 6.13610 6.76979 6.79636 8.47544 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.032651 B = 0.010821 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.337369 B = 2586.827106 C = 3421.185158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.370 3.630 3 O -0.492 6.492 4 C -0.210 4.210 5 C -0.042 4.042 6 C -0.155 4.155 7 C -0.070 4.070 8 C -0.178 4.178 9 C -0.061 4.061 10 S 0.017 5.983 11 C -0.588 4.588 12 H 0.079 0.921 13 C 0.054 3.946 14 N -0.905 5.905 15 Si 0.908 3.092 16 H -0.256 1.256 17 H -0.251 1.251 18 H -0.239 1.239 19 H 0.113 0.887 20 H 0.102 0.898 21 H 0.102 0.898 22 H 0.180 0.820 23 H 0.169 0.831 24 H 0.145 0.855 25 H 0.109 0.891 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.064 -5.340 1.046 17.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.251 3.749 3 O -0.373 6.373 4 C -0.221 4.221 5 C -0.060 4.060 6 C -0.177 4.177 7 C -0.091 4.091 8 C -0.202 4.202 9 C -0.177 4.177 10 S 0.273 5.727 11 C -0.734 4.734 12 H 0.096 0.904 13 C -0.153 4.153 14 N -0.541 5.541 15 Si 0.729 3.271 16 H -0.181 1.181 17 H -0.174 1.174 18 H -0.164 1.164 19 H 0.132 0.868 20 H 0.121 0.879 21 H 0.120 0.880 22 H 0.197 0.803 23 H 0.187 0.813 24 H 0.162 0.838 25 H 0.127 0.873 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.697 -3.391 1.136 17.076 hybrid contribution 1.620 -0.682 -0.063 1.758 sum -15.078 -4.073 1.073 15.655 Atomic orbital electron populations 1.22177 0.89293 1.06803 1.05559 1.23146 0.94036 0.86771 0.70904 1.90522 1.72474 1.35431 1.38837 1.20494 0.90966 0.97473 1.13119 1.21808 1.01459 0.89594 0.93188 1.21467 0.93122 0.99589 1.03502 1.21585 0.95812 0.96850 0.94824 1.21470 1.00433 0.92746 1.05573 1.22826 0.97014 0.98304 0.99574 1.83833 0.99175 1.06735 1.82972 1.23602 0.93533 0.99274 1.56994 0.90358 1.25629 0.93819 1.03394 0.92476 1.69960 0.99159 1.38000 1.46981 0.86009 0.80873 0.79692 0.80556 1.18069 1.17428 1.16354 0.86835 0.87911 0.87998 0.80270 0.81322 0.83761 0.87312 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 10.19 71.24 0.73 -2.67 15 2 C 0.37 12.42 7.20 27.87 0.20 12.62 15 3 O -0.49 -21.49 14.53 -3.21 -0.05 -21.54 15 4 C -0.21 -7.45 5.89 -20.02 -0.12 -7.57 15 5 C -0.04 -1.00 9.44 22.57 0.21 -0.79 15 6 C -0.15 -3.63 10.02 22.26 0.22 -3.41 15 7 C -0.07 -2.17 10.02 22.31 0.22 -1.95 15 8 C -0.18 -7.67 9.22 22.40 0.21 -7.47 15 9 C -0.06 -2.77 6.16 23.12 0.14 -2.63 15 10 S 0.02 0.91 16.55 -56.49 -0.93 -0.02 15 11 C -0.59 -35.63 9.54 67.97 0.65 -34.98 15 12 H 0.08 5.01 5.21 -2.91 -0.02 5.00 15 13 C 0.05 3.21 5.50 84.89 0.47 3.68 15 14 N -0.91 -55.68 13.96 21.66 0.30 -55.37 15 15 Si 0.91 45.18 27.74 68.60 1.90 47.09 15 16 H -0.26 -12.33 7.11 99.48 0.71 -11.63 15 17 H -0.25 -11.53 7.11 99.48 0.71 -10.83 15 18 H -0.24 -12.00 6.74 99.48 0.67 -11.33 15 19 H 0.11 1.28 5.60 -2.38 -0.01 1.27 15 20 H 0.10 1.68 8.14 -2.39 -0.02 1.66 15 21 H 0.10 1.69 8.14 -2.38 -0.02 1.67 15 22 H 0.18 2.36 5.92 -2.91 -0.02 2.34 15 23 H 0.17 2.36 8.06 -2.91 -0.02 2.34 15 24 H 0.14 3.61 8.06 -2.91 -0.02 3.59 15 25 H 0.11 5.45 5.04 -2.91 -0.01 5.43 15 26 H 0.28 15.82 8.31 -92.71 -0.77 15.05 15 Total: -1.00 -75.78 239.38 5.32 -70.45 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.17 Total: 4.57 kcal Atomic # 6 Polarization: -48.11 SS G_CDS: 2.93 Total: -45.18 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.30 Total: -55.37 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -0.93 Total: -0.02 kcal Total: -75.78 5.32 -70.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306826338.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.778 kcal (2) G-P(sol) polarization free energy of solvation -75.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds