Wall clock time and date at job start Mon Mar 30 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86798 * 120.00225 * 2 1 4 4 H 1.48499 * 109.47199 * 85.17202 * 3 2 1 5 5 H 1.48500 * 109.47161 * 205.17440 * 3 2 1 6 6 H 1.48506 * 109.47156 * 325.17150 * 3 2 1 7 7 C 1.40044 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99802 * 197.20907 * 7 2 1 9 9 C 1.40689 * 119.99950 * 17.21469 * 7 2 1 10 10 C 1.40779 * 120.68449 * 24.79279 * 9 7 2 11 11 C 1.37639 * 120.14498 * 180.02562 * 10 9 7 12 12 C 1.38460 * 121.40710 * 359.97438 * 11 10 9 13 13 C 1.38743 * 120.96647 * 0.02562 * 12 11 10 14 14 N 1.38243 * 134.08148 * 179.97438 * 13 12 11 15 15 H 0.96994 * 126.45049 * 359.97438 * 14 13 12 16 16 C 1.35952 * 107.10426 * 179.26183 * 14 13 12 17 17 Cl 1.73596 * 125.04838 * 180.09053 * 16 14 13 18 18 N 1.30661 * 109.90486 * 0.65833 * 16 14 13 19 19 C 1.34312 * 109.76793 * 359.43048 * 18 16 14 20 20 H 0.97006 * 119.99870 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.92947 * 0.03203 * 10 9 7 22 22 H 1.07995 * 119.29519 * 180.02562 * 11 10 9 23 23 H 1.08004 * 119.51962 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3877 2.1053 1.3951 5 1 3.5870 1.4128 -0.5956 6 1 1.4944 2.6211 -0.7996 7 6 2.0083 -1.2129 0.0005 8 1 3.0521 -1.2337 0.2773 9 6 1.3521 -2.4041 -0.3595 10 6 0.2166 -2.3756 -1.1912 11 6 -0.4171 -3.5478 -1.5361 12 6 0.0372 -4.7743 -1.0819 13 6 1.1513 -4.8631 -0.2598 14 7 1.8247 -5.9124 0.3373 15 1 1.6013 -6.8538 0.2692 16 6 2.8687 -5.3779 1.0248 17 17 4.0241 -6.2868 1.9482 18 7 2.8662 -4.0775 0.8973 19 6 1.8395 -3.6995 0.1183 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1580 -1.4320 -1.5596 22 1 -1.2868 -3.5100 -2.1753 23 1 -0.4838 -5.6751 -1.3712 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306830725.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:04 Heat of formation + Delta-G solvation = 52.566841 kcal Electronic energy + Delta-G solvation = -12304.256248 eV Core-core repulsion = 9950.518011 eV Total energy + Delta-G solvation = -2353.738237 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.75651 -36.52304 -35.80463 -33.63331 -31.98660 -29.19447 -27.86211 -25.19543 -21.71187 -21.09243 -20.13716 -17.99559 -16.60910 -15.67278 -15.22140 -14.60533 -14.43451 -13.19074 -13.04431 -12.78143 -11.86341 -11.63053 -11.40358 -11.24465 -11.02838 -10.68945 -10.31000 -10.12092 -9.95219 -9.62585 -9.20598 -8.89351 -7.22607 -7.14749 -6.92127 -4.42470 1.98727 2.17081 2.84729 2.98965 3.04998 3.16710 3.78597 3.83132 4.08045 4.45006 5.53525 5.66903 6.19555 6.41045 6.49301 6.71569 6.83907 7.07858 7.34417 7.70235 7.71169 7.85801 8.06304 8.25030 8.40608 8.58339 8.66442 9.02528 9.88311 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.032081 B = 0.009313 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.586631 B = 3005.960771 C = 3801.762864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.266 1.266 5 H -0.255 1.255 6 H -0.272 1.272 7 C -0.406 4.406 8 H 0.092 0.908 9 C 0.169 3.831 10 C -0.223 4.223 11 C -0.040 4.040 12 C -0.286 4.286 13 C 0.111 3.889 14 N -0.599 5.599 15 H 0.410 0.590 16 C 0.217 3.783 17 Cl -0.002 7.002 18 N -0.429 5.429 19 C -0.040 4.040 20 H 0.288 0.712 21 H 0.125 0.875 22 H 0.096 0.904 23 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 -4.643 -0.128 4.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.153 4.153 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.179 1.179 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.110 0.890 9 C 0.165 3.835 10 C -0.245 4.245 11 C -0.060 4.060 12 C -0.310 4.310 13 C 0.002 3.998 14 N -0.216 5.216 15 H 0.247 0.753 16 C -0.069 4.069 17 Cl 0.026 6.974 18 N -0.151 5.151 19 C -0.162 4.162 20 H 0.099 0.901 21 H 0.142 0.858 22 H 0.114 0.886 23 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.131 -3.916 0.375 4.474 hybrid contribution -0.285 -0.648 -0.121 0.719 sum 1.846 -4.565 0.253 4.930 Atomic orbital electron populations 1.69847 1.07902 1.30163 1.30485 1.26170 0.94894 1.02085 0.92113 0.86118 0.80856 0.79447 0.79477 1.19118 1.17895 1.19675 1.19784 0.98534 0.90590 1.34405 0.89038 1.17825 0.90302 0.87789 0.87633 1.20887 1.01054 0.97122 1.05449 1.20327 0.96944 0.92011 0.96693 1.18852 1.02005 0.97079 1.13039 1.18645 0.96470 0.86507 0.98220 1.42504 1.25400 1.08791 1.44934 0.75319 1.22474 0.92149 0.88531 1.03723 1.98329 1.55962 1.72088 1.71059 1.69412 1.21848 1.06797 1.17018 1.19898 0.96827 0.93963 1.05516 0.90130 0.85764 0.88621 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.53 10.96 55.55 0.61 -17.92 14 2 C 0.07 1.67 5.16 -17.31 -0.09 1.58 14 3 Si 0.92 17.83 29.59 -169.99 -5.03 12.79 14 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 14 5 H -0.26 -4.98 7.11 56.52 0.40 -4.57 14 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 14 7 C -0.41 -10.69 9.09 -37.98 -0.35 -11.03 14 8 H 0.09 2.41 7.90 -52.49 -0.41 1.99 14 9 C 0.17 4.56 5.73 -104.72 -0.60 3.96 14 10 C -0.22 -5.65 8.70 -38.84 -0.34 -5.98 14 11 C -0.04 -0.91 9.95 -39.72 -0.40 -1.30 14 12 C -0.29 -6.41 10.02 -39.31 -0.39 -6.80 14 13 C 0.11 2.61 7.30 -83.98 -0.61 2.00 14 14 N -0.60 -11.96 6.25 -8.85 -0.06 -12.02 14 15 H 0.41 6.43 8.96 -40.82 -0.37 6.06 14 16 C 0.22 4.62 8.79 -89.41 -0.79 3.83 14 17 Cl 0.00 -0.03 29.33 -51.86 -1.52 -1.55 14 18 N -0.43 -10.83 11.23 -7.69 -0.09 -10.92 14 19 C -0.04 -1.07 7.19 -82.68 -0.59 -1.66 14 20 H 0.29 6.23 8.30 -40.82 -0.34 5.89 14 21 H 0.12 3.14 6.18 -52.49 -0.32 2.82 14 22 H 0.10 1.88 8.06 -52.49 -0.42 1.45 14 23 H 0.09 1.71 8.06 -52.48 -0.42 1.28 14 LS Contribution 228.08 15.07 3.44 3.44 Total: -1.00 -28.16 228.08 -7.89 -36.05 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -1.08 Total: 5.54 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -4.16 Total: -15.42 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.47 Total: -40.86 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.52 Total: -1.55 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.16 -7.89 -36.05 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306830725.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.619 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds