Wall clock time and date at job start Mon Mar 30 2020 02:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.37648 * 120.04559 * 264.99741 * 10 9 7 12 12 C 1.38695 * 120.41336 * 179.97438 * 11 10 9 13 13 C 1.37922 * 120.50687 * 359.97412 * 12 11 10 14 14 C 1.39021 * 120.08365 * 0.02913 * 13 12 11 15 15 S 1.76198 * 120.20891 * 180.02562 * 14 13 12 16 16 C 1.40036 * 120.04734 * 84.72378 * 10 9 7 17 17 C 1.46583 * 120.24957 * 0.02562 * 16 10 9 18 18 O 1.21328 * 119.99895 * 180.02562 * 17 16 10 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.07998 * 119.79370 * 359.97438 * 11 10 9 23 23 H 1.08005 * 119.75167 * 179.97438 * 12 11 10 24 24 H 1.07995 * 119.95944 * 179.97438 * 13 12 11 25 25 H 1.41002 * 100.00205 * 89.99159 * 15 14 13 26 26 H 1.07997 * 120.00541 * 359.97438 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5992 -4.2307 -1.1999 12 6 3.5003 -5.2850 -1.2135 13 6 4.0394 -5.7604 -0.0364 14 6 3.6812 -5.1840 1.1770 15 16 4.3684 -5.7884 2.6827 16 6 2.7705 -4.1105 1.1947 17 6 2.3869 -3.4884 2.4653 18 8 2.8582 -3.8954 3.5066 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 2.1845 -3.8673 -2.1285 23 1 3.7820 -5.7372 -2.1529 24 1 4.7399 -6.5821 -0.0571 25 1 5.5143 -4.9718 2.7740 26 1 1.6855 -2.6673 2.4746 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306843739.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:59 Heat of formation + Delta-G solvation = -6.556549 kcal Electronic energy + Delta-G solvation = -12515.994043 eV Core-core repulsion = 10265.276073 eV Total energy + Delta-G solvation = -2250.717970 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.33094 -37.45512 -33.76337 -31.63929 -30.76052 -27.38339 -24.44822 -23.52169 -21.25769 -20.06559 -17.25361 -16.53362 -16.40233 -15.52946 -14.97053 -14.48187 -13.99387 -13.77364 -13.38527 -12.80954 -12.54360 -12.02662 -11.77615 -11.43034 -11.22295 -10.89938 -10.72547 -10.43666 -9.77852 -9.66742 -9.39385 -8.58900 -8.54109 -8.15496 -7.10206 -6.21304 -4.27260 0.91836 1.58218 2.08852 2.95259 3.05312 3.21231 3.28849 3.32104 4.18075 4.35620 4.93662 5.12790 5.17078 5.41160 5.57320 5.77494 5.98244 6.06898 6.41730 6.58831 6.62401 6.77914 7.18760 7.34165 7.47560 7.73257 8.07737 8.10763 8.77686 9.38590 10.88096 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.032909 B = 0.008778 C = 0.007763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.627223 B = 3189.172247 C = 3605.776105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.040 3.960 10 C 0.011 3.989 11 C -0.117 4.117 12 C -0.098 4.098 13 C -0.116 4.116 14 C -0.060 4.060 15 S -0.138 6.138 16 C -0.156 4.156 17 C 0.373 3.627 18 O -0.447 6.447 19 H 0.265 0.735 20 H 0.038 0.962 21 H 0.038 0.962 22 H 0.130 0.870 23 H 0.124 0.876 24 H 0.127 0.873 25 H 0.096 0.904 26 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 -8.281 -1.118 9.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C 0.004 3.996 10 C 0.009 3.991 11 C -0.135 4.135 12 C -0.118 4.118 13 C -0.136 4.136 14 C -0.172 4.172 15 S 0.020 5.980 16 C -0.160 4.160 17 C 0.231 3.769 18 O -0.319 6.319 19 H 0.075 0.925 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.148 0.852 23 H 0.142 0.858 24 H 0.145 0.855 25 H 0.060 0.940 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.665 -8.866 0.292 10.525 hybrid contribution 0.800 1.935 -1.196 2.411 sum 6.465 -6.931 -0.904 9.521 Atomic orbital electron populations 1.69937 1.06012 1.27236 1.49366 1.24981 0.94885 0.99294 0.94716 0.86530 0.79884 0.83009 0.78315 1.20457 1.20939 1.19787 1.20969 0.92999 0.89492 1.52464 0.92421 1.18519 0.92561 0.89219 0.99350 1.21036 0.93884 0.93565 0.90663 1.21280 0.97791 0.95798 0.98592 1.21306 0.96444 0.96505 0.97591 1.21349 1.00793 1.00235 0.91263 1.21552 1.01066 0.99075 0.95532 1.86618 1.31732 1.49733 1.29920 1.21034 1.00023 0.97681 0.97255 1.24218 0.81761 0.84633 0.86329 1.90635 1.47942 1.58392 1.34960 0.92514 0.94433 0.94401 0.85245 0.85825 0.85459 0.93961 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 13.29 55.43 0.74 -23.65 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 3 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 15 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.52 -13.33 9.09 -34.44 -0.31 -13.65 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 15 9 C 0.04 0.93 4.47 -29.03 -0.13 0.80 15 10 C 0.01 0.21 5.11 -104.16 -0.53 -0.32 15 11 C -0.12 -1.99 9.65 -39.63 -0.38 -2.37 15 12 C -0.10 -1.43 10.02 -39.53 -0.40 -1.83 15 13 C -0.12 -1.75 9.79 -39.41 -0.39 -2.14 15 14 C -0.06 -1.07 6.17 -38.33 -0.24 -1.30 15 15 S -0.14 -2.32 22.72 -107.50 -2.44 -4.76 15 16 C -0.16 -3.05 5.89 -104.89 -0.62 -3.67 15 17 C 0.37 7.43 10.86 34.10 0.37 7.80 15 18 O -0.45 -9.30 14.59 5.52 0.08 -9.21 15 19 H 0.27 6.92 8.31 -40.82 -0.34 6.58 15 20 H 0.04 0.89 6.63 -51.93 -0.34 0.55 15 21 H 0.04 0.91 8.05 -51.93 -0.42 0.49 15 22 H 0.13 2.05 8.06 -52.49 -0.42 1.62 15 23 H 0.12 1.37 8.06 -52.48 -0.42 0.95 15 24 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15 25 H 0.10 1.53 9.55 96.90 0.93 2.45 15 26 H 0.12 2.31 6.48 -52.49 -0.34 1.97 15 LS Contribution 248.89 15.07 3.75 3.75 Total: -1.00 -27.83 248.89 -6.60 -34.44 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -0.99 Total: -0.86 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -2.72 Total: -15.09 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.74 Total: -23.65 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: -2.32 SS G_CDS: -2.44 Total: -4.76 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.83 -6.60 -34.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306843739.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.879 kcal (2) G-P(sol) polarization free energy of solvation -27.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds