Wall clock time and date at job start Mon Mar 30 2020 02:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99778 * 2 1 4 4 H 1.48497 * 109.46803 * 239.99775 * 3 2 1 5 5 H 1.48498 * 109.47120 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46915 * 119.99627 * 3 2 1 7 7 C 1.37877 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99687 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47384 * 180.02562 * 9 7 2 11 11 C 1.38751 * 119.74840 * 89.99642 * 10 9 7 12 12 C 1.37597 * 120.41460 * 180.02562 * 11 10 9 13 13 C 1.40077 * 119.90388 * 0.02562 * 12 11 10 14 14 C 1.46582 * 120.24982 * 179.97438 * 13 12 11 15 15 O 1.21326 * 120.00658 * 180.02562 * 14 13 12 16 16 C 1.40755 * 119.50510 * 359.97438 * 13 12 11 17 17 S 1.76198 * 120.20698 * 179.72351 * 16 13 12 18 18 C 1.37870 * 119.74664 * 270.02230 * 10 9 7 19 19 H 0.97001 * 119.99985 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.47196 * 59.99562 * 9 7 2 21 21 H 1.09007 * 109.47076 * 299.99836 * 9 7 2 22 22 H 1.07995 * 119.78953 * 0.02562 * 11 10 9 23 23 H 1.08001 * 120.04724 * 179.97438 * 12 11 10 24 24 H 1.08009 * 119.99872 * 0.02562 * 14 13 12 25 25 H 1.40999 * 99.99769 * 90.00182 * 17 16 13 26 26 H 1.08004 * 119.95943 * 359.97438 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0018 11 6 2.6770 -4.1673 1.2070 12 6 3.5714 -5.2127 1.2242 13 6 4.0361 -5.7541 0.0187 14 6 4.9894 -6.8675 0.0282 15 8 5.3894 -7.3327 -1.0186 16 6 3.5807 -5.2210 -1.2018 17 16 4.1586 -5.8830 -2.7289 18 6 2.6762 -4.1648 -1.1946 19 1 -0.4850 0.8401 -0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8904 22 1 2.3202 -3.7510 2.1375 23 1 3.9154 -5.6147 2.1657 24 1 5.3360 -7.2738 0.9670 25 1 3.1879 -6.8825 -2.9454 26 1 2.3229 -3.7511 -2.1277 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306911351.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:31 Heat of formation + Delta-G solvation = -24.808749 kcal Electronic energy + Delta-G solvation = -12203.649689 eV Core-core repulsion = 9952.140244 eV Total energy + Delta-G solvation = -2251.509445 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.65601 -39.08540 -35.48468 -33.28688 -32.04138 -29.52345 -26.15004 -24.14666 -23.35068 -21.72026 -18.69779 -18.42278 -17.73716 -16.89664 -16.65170 -15.97286 -15.42878 -15.16171 -14.74273 -14.53691 -14.48658 -13.59855 -13.33546 -13.29688 -12.64251 -12.50013 -12.41199 -11.73244 -11.60565 -11.50876 -10.99712 -10.61510 -9.87969 -9.62097 -8.48885 -8.22950 -6.35895 -0.42671 0.22029 0.73174 1.41109 1.43324 1.51060 1.63806 1.67675 2.39554 2.85864 3.09538 3.44739 3.86585 4.13382 4.33032 4.42066 4.62024 4.66500 5.00502 5.17598 5.23544 5.30749 5.34615 5.70738 5.84937 5.89654 6.12890 6.65863 6.76078 7.33275 8.86489 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.042195 B = 0.006786 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.425765 B = 4125.169118 C = 4327.842113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.052 3.948 10 C -0.034 4.034 11 C -0.120 4.120 12 C -0.050 4.050 13 C -0.186 4.186 14 C 0.377 3.623 15 O -0.466 6.466 16 C -0.070 4.070 17 S -0.147 6.147 18 C -0.107 4.107 19 H 0.266 0.734 20 H 0.004 0.996 21 H 0.017 0.983 22 H 0.140 0.860 23 H 0.186 0.814 24 H 0.160 0.840 25 H 0.108 0.892 26 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 -11.357 3.529 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.569 4.569 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.036 4.036 11 C -0.138 4.138 12 C -0.069 4.069 13 C -0.190 4.190 14 C 0.235 3.765 15 O -0.339 6.339 16 C -0.182 4.182 17 S 0.011 5.989 18 C -0.128 4.128 19 H 0.075 0.925 20 H 0.022 0.978 21 H 0.035 0.965 22 H 0.157 0.843 23 H 0.203 0.797 24 H 0.176 0.824 25 H 0.072 0.928 26 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.053 -11.704 2.125 14.365 hybrid contribution -1.290 1.100 0.453 1.755 sum 6.763 -10.603 2.578 12.838 Atomic orbital electron populations 1.70055 1.07601 1.28119 1.50940 1.25862 0.95707 1.02957 0.94433 0.85532 0.78335 0.78236 0.79195 1.19678 1.20679 1.18894 1.21295 0.93122 0.91004 1.51495 0.92601 1.18204 0.92887 0.90775 0.96646 1.20705 0.95422 0.93967 0.93525 1.21441 0.97918 0.96687 0.97752 1.21759 0.93482 0.93542 0.98120 1.21468 1.02868 1.01982 0.92674 1.24544 0.77242 0.79802 0.94931 1.90721 1.49865 1.55358 1.37916 1.21704 1.00738 0.99788 0.95952 1.86765 1.41976 1.46044 1.24131 1.21440 0.97074 0.95742 0.98496 0.92482 0.97756 0.96452 0.84259 0.79688 0.82404 0.92791 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 13.29 21.45 0.28 -53.89 15 2 C 0.01 0.51 5.46 84.65 0.46 0.97 15 3 Si 0.96 43.07 29.54 68.60 2.03 45.10 15 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 15 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 15 7 C -0.53 -29.09 9.09 25.60 0.23 -28.85 15 8 H 0.06 3.01 7.74 -2.91 -0.02 2.99 15 9 C 0.05 2.62 5.09 29.10 0.15 2.77 15 10 C -0.03 -1.39 5.07 -19.83 -0.10 -1.49 15 11 C -0.12 -3.86 9.66 22.24 0.21 -3.65 15 12 C -0.05 -1.18 9.79 22.56 0.22 -0.96 15 13 C -0.19 -5.07 5.89 -20.04 -0.12 -5.19 15 14 C 0.38 8.15 11.42 70.00 0.80 8.95 15 15 O -0.47 -13.61 14.59 -3.17 -0.05 -13.66 15 16 C -0.07 -2.38 6.17 23.08 0.14 -2.23 15 17 S -0.15 -4.80 22.72 -56.49 -1.28 -6.09 15 18 C -0.11 -4.16 9.42 22.38 0.21 -3.95 15 19 H 0.27 14.66 8.31 -92.71 -0.77 13.89 15 20 H 0.00 0.23 8.08 -2.39 -0.02 0.21 15 21 H 0.02 0.90 8.08 -2.38 -0.02 0.88 15 22 H 0.14 4.17 8.06 -2.91 -0.02 4.14 15 23 H 0.19 2.34 8.06 -2.91 -0.02 2.32 15 24 H 0.16 1.57 8.06 -2.91 -0.02 1.55 15 25 H 0.11 3.16 9.55 73.80 0.70 3.86 15 26 H 0.12 4.81 8.06 -2.91 -0.02 4.78 15 Total: -1.00 -66.03 252.52 5.10 -60.93 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: 1.90 Total: 1.25 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 2.21 Total: -33.64 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.28 Total: -53.89 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.05 Total: -13.66 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -1.28 Total: -6.09 kcal Total: -66.03 5.10 -60.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306911351.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.124 kcal (2) G-P(sol) polarization free energy of solvation -66.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds