Wall clock time and date at job start Mon Mar 30 2020 02:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00478 * 3 2 1 6 6 H 1.48497 * 109.47329 * 150.00191 * 3 2 1 7 7 C 1.37875 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38264 * 119.86619 * 90.00235 * 10 9 7 12 12 C 1.39079 * 120.27341 * 180.02562 * 11 10 9 13 13 S 1.76202 * 120.00198 * 179.97438 * 12 11 10 14 14 C 1.38676 * 120.00460 * 0.02562 * 12 11 10 15 15 C 1.39723 * 119.74013 * 359.97438 * 14 12 11 16 16 C 1.47185 * 120.13442 * 180.02562 * 15 14 12 17 17 O 1.21253 * 119.99859 * 179.97438 * 16 15 14 18 18 C 1.37927 * 119.86725 * 269.73400 * 10 9 7 19 19 H 0.97006 * 119.99727 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 21 21 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 22 22 H 1.08007 * 119.86683 * 359.97438 * 11 10 9 23 23 H 1.34500 * 102.99718 * 89.99751 * 13 12 11 24 24 H 1.08007 * 120.13033 * 179.97438 * 14 12 11 25 25 H 1.08001 * 120.00132 * 359.97438 * 16 15 14 26 26 H 1.07991 * 120.00905 * 359.97438 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0023 11 6 4.2429 -3.2633 -1.2018 12 6 4.7060 -4.5746 -1.2127 13 16 4.9949 -5.3942 -2.7456 14 6 4.9394 -5.2377 -0.0173 15 6 4.7080 -4.5829 1.1951 16 6 4.9534 -5.2781 2.4690 17 8 4.7522 -4.7074 3.5197 18 6 4.2485 -3.2615 1.1933 19 1 -0.4850 0.8401 0.0004 20 1 3.8751 -0.6805 0.8889 21 1 3.8746 -0.6799 -0.8910 22 1 4.0607 -2.7495 -2.1342 23 1 6.2803 -5.0985 -3.0092 24 1 5.2987 -6.2562 -0.0234 25 1 5.3126 -6.2966 2.4678 26 1 4.0727 -2.7495 2.1277 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307110106.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:44 Heat of formation + Delta-G solvation = -34.172672 kcal Electronic energy + Delta-G solvation = -12181.064769 eV Core-core repulsion = 9929.149274 eV Total energy + Delta-G solvation = -2251.915495 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.81166 -39.21655 -35.51993 -33.58444 -32.26707 -29.68046 -25.92393 -25.06953 -23.01125 -21.40886 -19.02412 -18.68172 -17.63750 -17.29507 -16.61980 -16.28265 -15.72314 -15.38239 -15.15339 -14.89949 -14.17191 -13.77743 -13.62021 -13.19212 -12.85462 -12.41651 -12.12514 -12.04365 -11.73823 -11.46424 -10.84559 -10.76786 -9.95560 -9.65719 -9.14517 -8.33312 -6.39522 -0.39056 0.08695 0.66190 1.34208 1.36577 1.43155 1.47648 1.90788 2.32219 2.77179 3.00955 3.32297 3.82404 4.09753 4.15036 4.35682 4.44034 4.50587 4.89669 5.00701 5.01909 5.12308 5.24240 5.50352 5.70312 5.76488 6.20337 6.49898 6.66508 7.24343 8.83248 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.023533 B = 0.008556 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.515020 B = 3271.824739 C = 4103.032205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.525 4.525 8 H 0.029 0.971 9 C 0.020 3.980 10 C -0.081 4.081 11 C -0.051 4.051 12 C -0.130 4.130 13 S -0.120 6.120 14 C -0.020 4.020 15 C -0.205 4.205 16 C 0.398 3.602 17 O -0.507 6.507 18 C -0.056 4.056 19 H 0.269 0.731 20 H 0.030 0.970 21 H 0.037 0.963 22 H 0.133 0.867 23 H 0.087 0.913 24 H 0.186 0.814 25 H 0.172 0.828 26 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.282 -11.049 -2.277 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.171 1.171 7 C -0.563 4.563 8 H 0.047 0.953 9 C -0.017 4.017 10 C -0.083 4.083 11 C -0.071 4.071 12 C -0.242 4.242 13 S 0.037 5.963 14 C -0.041 4.041 15 C -0.208 4.208 16 C 0.259 3.741 17 O -0.383 6.383 18 C -0.074 4.074 19 H 0.077 0.923 20 H 0.049 0.951 21 H 0.055 0.945 22 H 0.151 0.849 23 H 0.051 0.949 24 H 0.203 0.797 25 H 0.188 0.812 26 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.966 -11.153 -2.534 18.052 hybrid contribution 0.283 1.926 0.611 2.040 sum 14.250 -9.227 -1.923 17.085 Atomic orbital electron populations 1.70054 1.08332 1.28376 1.51906 1.25971 0.95597 1.03384 0.93797 0.85668 0.79431 0.78139 0.79526 1.18563 1.20882 1.17105 1.21138 0.90680 0.93131 1.51329 0.95306 1.18677 0.94500 0.90596 0.97941 1.20114 0.97180 0.97863 0.93158 1.21812 0.93465 0.93704 0.98156 1.21254 1.09483 0.96655 0.96787 1.85961 1.18127 1.67695 1.24468 1.22080 0.92892 1.00376 0.88710 1.21276 1.06689 0.95227 0.97632 1.24824 0.70969 0.93726 0.84581 1.90535 1.41192 1.70758 1.35793 1.21552 0.93375 0.94724 0.97787 0.92252 0.95144 0.94491 0.84931 0.94903 0.79718 0.81246 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.42 13.96 21.45 0.30 -59.12 15 2 C 0.01 0.58 5.47 84.65 0.46 1.05 15 3 Si 0.95 43.64 27.47 68.60 1.88 45.52 15 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 15 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 6 H -0.25 -10.58 6.54 99.48 0.65 -9.93 15 7 C -0.52 -30.34 9.65 25.60 0.25 -30.09 15 8 H 0.03 1.86 7.98 -2.91 -0.02 1.84 15 9 C 0.02 0.95 4.16 29.10 0.12 1.07 15 10 C -0.08 -3.28 5.06 -19.93 -0.10 -3.38 15 11 C -0.05 -1.77 9.43 22.48 0.21 -1.56 15 12 C -0.13 -3.61 6.10 22.58 0.14 -3.47 15 13 S -0.12 -2.73 25.77 -56.49 -1.46 -4.19 15 14 C -0.02 -0.46 9.54 22.73 0.22 -0.24 15 15 C -0.21 -5.68 5.87 -20.17 -0.12 -5.80 15 16 C 0.40 8.97 11.46 70.17 0.80 9.77 15 17 O -0.51 -16.57 17.16 -2.95 -0.05 -16.62 15 18 C -0.06 -2.08 9.24 22.60 0.21 -1.87 15 19 H 0.27 15.65 8.31 -92.70 -0.77 14.88 15 20 H 0.03 1.41 7.14 -2.39 -0.02 1.39 15 21 H 0.04 1.63 7.51 -2.39 -0.02 1.61 15 22 H 0.13 4.55 8.06 -2.91 -0.02 4.53 15 23 H 0.09 1.67 9.07 73.35 0.67 2.34 15 24 H 0.19 2.37 8.06 -2.91 -0.02 2.34 15 25 H 0.17 1.63 8.06 -2.91 -0.02 1.60 15 26 H 0.11 4.62 7.64 -2.92 -0.02 4.60 15 Total: -1.00 -71.16 252.92 4.68 -66.48 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: 1.81 Total: 2.44 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 2.19 Total: -34.52 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.30 Total: -59.12 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.05 Total: -16.62 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -1.46 Total: -4.19 kcal Total: -71.16 4.68 -66.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307110106.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.312 kcal (2) G-P(sol) polarization free energy of solvation -71.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds