Wall clock time and date at job start Mon Mar 30 2020 02:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47205 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 29.36153 * 3 2 1 5 5 N 1.46899 * 109.47167 * 273.54201 * 4 3 2 6 6 C 1.46851 * 110.99898 * 45.79106 * 5 4 3 7 7 C 1.53039 * 109.52490 * 185.83779 * 6 5 4 8 8 C 1.53116 * 109.27694 * 300.82213 * 7 6 5 9 9 C 1.53002 * 109.57479 * 177.58614 * 8 7 6 10 10 C 1.50702 * 109.46629 * 65.28624 * 9 8 7 11 11 H 1.08002 * 120.00204 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99548 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00593 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99672 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47287 * 60.00621 * 14 12 10 16 16 H 1.48496 * 109.47092 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47283 * 300.00224 * 14 12 10 18 18 C 1.53121 * 109.16460 * 57.65281 * 8 7 6 19 19 C 1.46842 * 111.00041 * 169.99731 * 5 4 3 20 20 H 1.08992 * 109.47494 * 357.09583 * 1 2 3 21 21 H 1.09001 * 109.46765 * 117.09551 * 1 2 3 22 22 H 1.08996 * 109.46684 * 237.09365 * 1 2 3 23 23 H 1.09002 * 109.47120 * 153.54271 * 4 3 2 24 24 H 1.09001 * 109.46952 * 33.54408 * 4 3 2 25 25 H 1.08996 * 109.46471 * 305.85679 * 6 5 4 26 26 H 1.09004 * 109.45929 * 65.82278 * 6 5 4 27 27 H 1.08992 * 109.50519 * 180.88071 * 7 6 5 28 28 H 1.09003 * 109.50071 * 60.76201 * 7 6 5 29 29 H 1.08999 * 109.52546 * 297.75036 * 8 7 6 30 30 H 1.08996 * 109.47250 * 185.28218 * 9 8 7 31 31 H 1.08996 * 109.47208 * 305.28642 * 9 8 7 32 32 H 0.96994 * 120.00371 * 179.97438 * 13 12 10 33 33 H 1.08994 * 109.50961 * 182.40006 * 18 8 7 34 34 H 1.09008 * 109.53352 * 62.30425 * 18 8 7 35 35 H 1.08996 * 109.46789 * 294.18136 * 19 5 4 36 36 H 1.09007 * 109.45854 * 54.15867 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0006 -0.0003 5 7 4.6080 -0.0849 1.3819 6 6 3.8824 -1.1162 2.1346 7 6 4.3153 -1.0781 3.6020 8 6 5.8243 -1.3222 3.6903 9 6 6.2747 -1.2259 5.1494 10 6 5.6501 -2.3448 5.9426 11 1 4.9976 -3.0538 5.4547 12 6 5.9125 -2.4639 7.2909 13 7 6.7074 -1.6008 7.8849 14 14 5.1378 -3.8503 8.2743 15 1 5.5637 -5.1560 7.7093 16 1 5.5749 -3.7570 9.6904 17 1 3.6585 -3.7398 8.2050 18 6 6.5542 -0.2637 2.8587 19 6 6.0563 -0.3254 1.4129 20 1 -0.3634 1.0262 0.0521 21 1 -0.3633 -0.4681 -0.9149 22 1 -0.3632 -0.5583 0.8628 23 1 4.4812 0.9207 -0.4583 24 1 4.4813 -0.8559 -0.5683 25 1 2.8108 -0.9286 2.0671 26 1 4.1064 -2.0970 1.7151 27 1 3.7882 -1.8539 4.1572 28 1 4.0791 -0.1021 4.0259 29 1 6.0563 -2.3139 3.3021 30 1 7.3604 -1.3064 5.2006 31 1 5.9614 -0.2678 5.5639 32 1 6.8917 -1.6844 8.8335 33 1 7.6265 -0.4575 2.8830 34 1 6.3539 0.7254 3.2707 35 1 6.2701 -1.3099 0.9969 36 1 6.5637 0.4368 0.8214 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307395490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:27 Heat of formation + Delta-G solvation = 28.335670 kcal Electronic energy + Delta-G solvation = -14765.353361 eV Core-core repulsion = 12442.780411 eV Total energy + Delta-G solvation = -2322.572950 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.82425 -35.20731 -33.59322 -32.20898 -30.37948 -29.50039 -27.58597 -25.28283 -23.22237 -22.50640 -20.62092 -18.88843 -16.67836 -16.23515 -15.66180 -14.82042 -14.49118 -14.34482 -13.76234 -13.66988 -13.44063 -13.25509 -12.82028 -12.53086 -12.23072 -11.85019 -11.59203 -11.11339 -10.80475 -10.63607 -10.58901 -10.24521 -10.01972 -9.84421 -9.74771 -9.46406 -9.01354 -8.84878 -8.29206 -8.07820 -5.94179 -3.95577 2.63194 2.73949 3.35910 3.40396 3.42699 4.15310 4.33907 4.50105 5.27036 5.30571 5.37180 5.41029 5.44597 5.49649 5.53245 5.56294 5.72150 5.76891 5.83942 5.93645 6.01893 6.16963 6.28316 6.47136 6.61146 6.70618 7.01189 7.13284 7.23257 7.31268 7.39063 7.66673 7.73828 7.90993 8.06697 8.49937 9.10732 9.67627 11.17182 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.032478 B = 0.005983 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.916164 B = 4678.900763 C = 5353.248450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.192 4.192 3 C -0.174 4.174 4 C 0.166 3.834 5 N -0.533 5.533 6 C 0.054 3.946 7 C -0.099 4.099 8 C -0.082 4.082 9 C 0.028 3.972 10 C -0.515 4.515 11 H 0.054 0.946 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.889 3.111 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.112 4.112 19 C 0.059 3.941 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.026 0.974 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.014 0.986 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.907 2.845 -15.196 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.193 4.193 3 C -0.175 4.175 4 C 0.039 3.961 5 N -0.259 5.259 6 C -0.073 4.073 7 C -0.137 4.137 8 C -0.101 4.101 9 C -0.009 4.009 10 C -0.553 4.553 11 H 0.072 0.928 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.717 3.283 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.149 4.149 19 C -0.069 4.069 20 H 0.097 0.903 21 H 0.095 0.905 22 H 0.099 0.901 23 H 0.112 0.888 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.897 3.335 -14.790 16.657 hybrid contribution -0.235 -1.537 0.236 1.573 sum -7.132 1.798 -14.554 16.307 Atomic orbital electron populations 1.18825 0.84739 1.02926 1.02855 1.22366 0.93871 1.02248 1.00833 1.22101 0.93411 1.00784 1.01187 1.19046 0.84299 1.01553 0.91167 1.62118 1.04568 1.48646 1.10535 1.22265 0.97828 0.91538 0.95683 1.21548 0.97146 1.02394 0.92580 1.21250 0.93810 0.96393 0.98646 1.19111 0.96242 0.97083 0.88434 1.21224 1.28320 1.12196 0.93560 0.92801 1.25010 0.95347 0.96113 0.97965 1.69951 1.36740 1.36164 1.10757 0.86717 0.79714 0.82791 0.79115 1.20359 1.21355 1.20313 1.21693 0.99237 1.00965 0.93053 1.22141 0.86807 0.99001 0.98919 0.90331 0.90507 0.90121 0.88814 0.92989 0.91275 0.95544 0.90926 0.91883 0.93043 0.96737 0.96491 0.93054 0.91939 0.91503 0.95142 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.33 10.32 34.37 0.35 0.02 16 2 C -0.19 -2.50 13.89 -37.12 -0.52 -3.02 16 3 C -0.17 -2.46 11.51 -37.12 -0.43 -2.89 16 4 C 0.17 2.17 5.77 -6.61 -0.04 2.13 16 5 N -0.53 -8.34 4.79 -238.17 -1.14 -9.48 16 6 C 0.05 0.92 5.08 -3.83 -0.02 0.90 16 7 C -0.10 -1.96 5.15 -26.65 -0.14 -2.09 16 8 C -0.08 -1.72 2.20 -90.50 -0.20 -1.92 16 9 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 10 C -0.51 -14.56 8.45 -34.44 -0.29 -14.85 16 11 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 14 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C -0.11 -1.97 5.38 -26.65 -0.14 -2.12 16 19 C 0.06 0.87 5.42 -3.83 -0.02 0.85 16 20 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 25 H 0.07 1.16 6.36 -51.93 -0.33 0.83 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 1.52 7.06 -51.93 -0.37 1.15 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 LS Contribution 294.73 15.07 4.44 4.44 Total: -1.00 -30.93 294.73 -8.76 -39.69 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -6.12 Total: -4.17 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -1.66 Total: -20.83 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.40 Total: -35.97 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.93 -8.76 -39.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307395490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.024 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds