Wall clock time and date at job start Mon Mar 30 2020 02:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47205 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 29.36153 * 3 2 1 5 5 N 1.46899 * 109.47167 * 273.54201 * 4 3 2 6 6 C 1.46851 * 110.99898 * 45.79106 * 5 4 3 7 7 C 1.53039 * 109.52490 * 185.83779 * 6 5 4 8 8 C 1.53116 * 109.27694 * 300.82213 * 7 6 5 9 9 C 1.53002 * 109.57479 * 177.58614 * 8 7 6 10 10 C 1.50702 * 109.46629 * 65.28624 * 9 8 7 11 11 H 1.08002 * 120.00204 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99548 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00593 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99672 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47287 * 60.00621 * 14 12 10 16 16 H 1.48496 * 109.47092 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47283 * 300.00224 * 14 12 10 18 18 C 1.53121 * 109.16460 * 57.65281 * 8 7 6 19 19 C 1.46842 * 111.00041 * 169.99731 * 5 4 3 20 20 H 1.08992 * 109.47494 * 357.09583 * 1 2 3 21 21 H 1.09001 * 109.46765 * 117.09551 * 1 2 3 22 22 H 1.08996 * 109.46684 * 237.09365 * 1 2 3 23 23 H 1.09002 * 109.47120 * 153.54271 * 4 3 2 24 24 H 1.09001 * 109.46952 * 33.54408 * 4 3 2 25 25 H 1.08996 * 109.46471 * 305.85679 * 6 5 4 26 26 H 1.09004 * 109.45929 * 65.82278 * 6 5 4 27 27 H 1.08992 * 109.50519 * 180.88071 * 7 6 5 28 28 H 1.09003 * 109.50071 * 60.76201 * 7 6 5 29 29 H 1.08999 * 109.52546 * 297.75036 * 8 7 6 30 30 H 1.08996 * 109.47250 * 185.28218 * 9 8 7 31 31 H 1.08996 * 109.47208 * 305.28642 * 9 8 7 32 32 H 0.96994 * 120.00371 * 179.97438 * 13 12 10 33 33 H 1.08994 * 109.50961 * 182.40006 * 18 8 7 34 34 H 1.09008 * 109.53352 * 62.30425 * 18 8 7 35 35 H 1.08996 * 109.46789 * 294.18136 * 19 5 4 36 36 H 1.09007 * 109.45854 * 54.15867 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0006 -0.0003 5 7 4.6080 -0.0849 1.3819 6 6 3.8824 -1.1162 2.1346 7 6 4.3153 -1.0781 3.6020 8 6 5.8243 -1.3222 3.6903 9 6 6.2747 -1.2259 5.1494 10 6 5.6501 -2.3448 5.9426 11 1 4.9976 -3.0538 5.4547 12 6 5.9125 -2.4639 7.2909 13 7 6.7074 -1.6008 7.8849 14 14 5.1378 -3.8503 8.2743 15 1 5.5637 -5.1560 7.7093 16 1 5.5749 -3.7570 9.6904 17 1 3.6585 -3.7398 8.2050 18 6 6.5542 -0.2637 2.8587 19 6 6.0563 -0.3254 1.4129 20 1 -0.3634 1.0262 0.0521 21 1 -0.3633 -0.4681 -0.9149 22 1 -0.3632 -0.5583 0.8628 23 1 4.4812 0.9207 -0.4583 24 1 4.4813 -0.8559 -0.5683 25 1 2.8108 -0.9286 2.0671 26 1 4.1064 -2.0970 1.7151 27 1 3.7882 -1.8539 4.1572 28 1 4.0791 -0.1021 4.0259 29 1 6.0563 -2.3139 3.3021 30 1 7.3604 -1.3064 5.2006 31 1 5.9614 -0.2678 5.5639 32 1 6.8917 -1.6844 8.8335 33 1 7.6265 -0.4575 2.8830 34 1 6.3539 0.7254 3.2707 35 1 6.2701 -1.3099 0.9969 36 1 6.5637 0.4368 0.8214 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307395490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:27 Heat of formation + Delta-G solvation = 9.994813 kcal Electronic energy + Delta-G solvation = -14766.148680 eV Core-core repulsion = 12442.780411 eV Total energy + Delta-G solvation = -2323.368269 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.17766 -36.66237 -34.98997 -33.95829 -31.75642 -30.83169 -29.02435 -26.72404 -24.89386 -23.93534 -22.24424 -20.47221 -18.43208 -17.69342 -16.92477 -16.48267 -15.96482 -15.48467 -15.16124 -14.78329 -14.60323 -14.40194 -14.12365 -14.05198 -13.61844 -13.41967 -13.16095 -12.95418 -12.63082 -12.43499 -12.19692 -12.04042 -11.69896 -11.29724 -10.96476 -10.85785 -10.71213 -10.62015 -10.50441 -9.25544 -8.16936 -6.26735 1.39218 1.42091 1.49830 1.63534 1.77527 2.41925 3.09310 3.16213 3.34725 3.99689 4.02852 4.08129 4.31528 4.47119 4.47926 4.62228 4.64644 4.74568 4.78975 4.81517 4.84803 4.88071 4.93082 5.06097 5.11537 5.14427 5.37398 5.39498 5.42612 5.57005 5.80049 5.88680 6.08152 6.15516 6.30301 6.70923 6.88945 7.41493 8.94834 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.032478 B = 0.005983 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.916164 B = 4678.900763 C = 5353.248450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.193 4.193 3 C -0.215 4.215 4 C 0.168 3.832 5 N -0.547 5.547 6 C 0.068 3.932 7 C -0.093 4.093 8 C -0.076 4.076 9 C 0.034 3.966 10 C -0.532 4.532 11 H 0.059 0.941 12 C -0.001 4.001 13 N -0.935 5.935 14 Si 0.960 3.040 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.268 1.268 18 C -0.108 4.108 19 C 0.066 3.934 20 H 0.093 0.907 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.113 0.887 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.030 0.970 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.049 0.951 30 H -0.011 1.011 31 H -0.013 1.013 32 H 0.262 0.738 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.017 2.221 -16.753 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.194 4.194 3 C -0.215 4.215 4 C 0.042 3.958 5 N -0.273 5.273 6 C -0.060 4.060 7 C -0.131 4.131 8 C -0.094 4.094 9 C -0.003 4.003 10 C -0.570 4.570 11 H 0.077 0.923 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.785 3.215 15 H -0.192 1.192 16 H -0.209 1.209 17 H -0.193 1.193 18 C -0.146 4.146 19 C -0.062 4.062 20 H 0.111 0.889 21 H 0.116 0.884 22 H 0.106 0.894 23 H 0.131 0.869 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.007 0.993 31 H 0.005 0.995 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.013 2.712 -16.370 18.427 hybrid contribution 0.092 -1.296 0.719 1.485 sum -7.921 1.416 -15.651 17.598 Atomic orbital electron populations 1.19083 0.82333 1.04234 1.04179 1.23355 0.95211 1.01300 0.99537 1.22544 0.94278 1.02069 1.02654 1.19127 0.84023 1.03113 0.89501 1.62054 1.04811 1.47995 1.12405 1.22016 0.98053 0.92324 0.93564 1.21409 0.96056 1.00727 0.94869 1.21105 0.95038 0.97576 0.95724 1.19002 0.94440 0.95052 0.91819 1.21620 1.28362 1.12735 0.94266 0.92326 1.25946 0.95804 0.98819 0.99261 1.70092 1.38159 1.38147 1.11171 0.85577 0.79026 0.79533 0.77380 1.19214 1.20892 1.19315 1.21613 0.99336 0.98909 0.94708 1.22094 0.86604 1.00680 0.96782 0.88879 0.88444 0.89426 0.86891 0.91579 0.91119 0.95176 0.92646 0.93530 0.93229 0.99297 0.99462 0.92908 0.91328 0.92647 0.94208 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.65 10.32 70.18 0.72 0.08 16 2 C -0.19 -4.66 13.89 31.13 0.43 -4.22 16 3 C -0.22 -5.67 11.51 31.13 0.36 -5.31 16 4 C 0.17 3.97 5.77 84.50 0.49 4.46 16 5 N -0.55 -16.08 4.79 -907.45 -4.35 -20.43 16 6 C 0.07 2.24 5.08 86.33 0.44 2.68 16 7 C -0.09 -3.71 5.15 30.65 0.16 -3.55 16 8 C -0.08 -3.22 2.20 -10.71 -0.02 -3.24 16 9 C 0.03 1.84 4.45 29.85 0.13 1.97 16 10 C -0.53 -30.72 8.45 25.60 0.22 -30.50 16 11 H 0.06 3.25 7.08 -2.91 -0.02 3.23 16 12 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 13 N -0.94 -58.10 13.29 21.45 0.28 -57.82 16 14 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 C -0.11 -3.76 5.38 30.65 0.16 -3.60 16 19 C 0.07 1.79 5.42 86.33 0.47 2.26 16 20 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 25 H 0.07 2.30 6.36 -2.39 -0.02 2.29 16 26 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 2.36 7.06 -2.39 -0.02 2.34 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 30 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 34 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 2.16 8.12 -2.38 -0.02 2.14 16 Total: -1.00 -67.41 294.73 3.01 -64.41 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: 1.03 Total: 5.33 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 4.02 Total: -38.58 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -4.06 Total: -78.25 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -67.41 3.01 -64.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307395490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.401 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds