Wall clock time and date at job start Mon Mar 30 2020 02:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.47270 * 2 1 4 4 C 1.50699 * 109.46801 * 240.00124 * 2 1 3 5 5 H 1.07999 * 120.00254 * 274.99169 * 4 2 1 6 6 C 1.37878 * 119.99950 * 94.99800 * 4 2 1 7 7 N 1.31517 * 119.99753 * 184.91233 * 6 4 2 8 8 Si 1.86797 * 120.00140 * 4.91080 * 6 4 2 9 9 H 1.48500 * 109.47025 * 84.83082 * 8 6 4 10 10 H 1.48501 * 109.47193 * 204.82837 * 8 6 4 11 11 H 1.48497 * 109.47244 * 324.83286 * 8 6 4 12 12 N 1.46899 * 109.47101 * 119.99737 * 2 1 3 13 13 C 1.46891 * 111.00376 * 274.99864 * 12 2 1 14 14 C 1.53000 * 109.47486 * 179.97438 * 13 12 2 15 15 H 1.09005 * 110.51468 * 54.29983 * 14 13 12 16 16 C 1.54837 * 110.58129 * 291.51913 * 14 13 12 17 17 C 1.56550 * 103.51218 * 241.48074 * 16 14 13 18 18 H 1.09003 * 116.92941 * 163.48130 * 17 16 14 19 19 C 1.53352 * 104.02424 * 293.24355 * 17 16 14 20 20 C 1.31797 * 108.42258 * 70.15302 * 19 17 16 21 21 C 1.53355 * 108.42614 * 359.97438 * 20 19 17 22 22 H 1.08997 * 116.99063 * 160.11863 * 21 20 19 23 23 C 1.57256 * 99.79953 * 33.33909 * 21 20 19 24 24 H 1.08995 * 109.46702 * 175.04869 * 1 2 3 25 25 H 1.08994 * 109.46801 * 295.04428 * 1 2 3 26 26 H 1.08997 * 109.46821 * 55.04203 * 1 2 3 27 27 H 0.97003 * 119.99747 * 180.02562 * 7 6 4 28 28 H 1.00898 * 110.99798 * 38.96125 * 12 2 1 29 29 H 1.08999 * 109.47129 * 300.00444 * 13 12 2 30 30 H 1.09001 * 109.46898 * 59.99984 * 13 12 2 31 31 H 1.08998 * 110.58210 * 359.97438 * 16 14 13 32 32 H 1.08994 * 110.58281 * 122.90231 * 16 14 13 33 33 H 1.08006 * 125.79270 * 250.14425 * 19 17 16 34 34 H 1.08004 * 125.78663 * 180.02562 * 20 19 17 35 35 H 1.08997 * 112.52524 * 66.63709 * 23 21 20 36 36 H 1.08999 * 112.52762 * 194.50461 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1356 -1.7854 -1.2291 6 6 2.3602 0.0121 -2.3581 7 7 2.7058 -0.6132 -3.4623 8 14 2.3133 1.8791 -2.3175 9 1 3.5989 2.3950 -1.7823 10 1 2.1056 2.3991 -3.6929 11 1 1.1984 2.3274 -1.4451 12 7 2.0197 -0.6924 1.1995 13 6 2.0826 0.2226 2.3468 14 6 2.5951 -0.5331 3.5745 15 1 3.5455 -1.0196 3.3543 16 6 1.5496 -1.5714 4.0503 17 6 1.1952 -1.0960 5.4991 18 1 0.2841 -1.4988 5.9418 19 6 2.4905 -1.3162 6.2898 20 6 3.3819 -0.4349 5.8827 21 6 2.7424 0.4331 4.7922 22 1 3.2094 1.3969 4.5898 23 6 1.2581 0.4637 5.3106 24 1 -0.3632 -1.0238 -0.0887 25 1 -0.3633 0.4350 0.9310 26 1 -0.3633 0.5888 -0.8422 27 1 2.9368 -0.1048 -4.2555 28 1 1.4497 -1.4979 1.4100 29 1 2.7589 1.0462 2.1181 30 1 1.0872 0.6163 2.5525 31 1 0.6668 -1.5465 3.4115 32 1 1.9832 -2.5712 4.0683 33 1 2.6460 -2.0662 7.0513 34 1 4.3919 -0.3406 6.2537 35 1 1.1558 1.0023 6.2526 36 1 0.5590 0.8214 4.5547 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378728882.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:18 Heat of formation + Delta-G solvation = 26.609526 kcal Electronic energy + Delta-G solvation = -15219.352677 eV Core-core repulsion = 12896.704876 eV Total energy + Delta-G solvation = -2322.647801 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.62811 -36.16765 -32.73326 -31.22323 -29.21380 -28.34663 -27.26587 -25.20762 -23.70039 -20.64938 -19.87722 -19.64509 -17.84086 -16.97269 -16.31698 -15.57887 -14.78663 -14.07344 -13.76298 -13.13392 -12.95482 -12.50827 -12.34993 -11.99819 -11.86055 -11.55322 -11.31046 -11.19629 -11.12066 -10.99256 -10.71040 -10.53924 -10.30927 -10.21581 -9.88426 -9.67742 -9.10460 -8.87997 -8.48051 -7.29343 -6.01927 -3.98606 2.24923 3.30846 3.38540 3.38662 4.45222 4.54776 4.56926 4.63194 4.99431 5.10800 5.30755 5.34853 5.35870 5.49448 5.60436 5.69297 5.76757 5.84611 5.98957 6.04357 6.13727 6.17186 6.20400 6.27450 6.37935 6.43218 6.51271 6.60177 6.64710 6.86988 6.97252 7.16691 7.75443 8.03141 8.44838 8.72211 9.06159 9.61256 11.11913 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.049362 B = 0.006373 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.102370 B = 4392.792913 C = 4463.148739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.179 3.821 3 H 0.035 0.965 4 C -0.490 4.490 5 H 0.075 0.925 6 C 0.069 3.931 7 N -0.902 5.902 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.675 5.675 13 C 0.065 3.935 14 C -0.083 4.083 15 H 0.082 0.918 16 C -0.113 4.113 17 C -0.081 4.081 18 H 0.095 0.905 19 C -0.171 4.171 20 C -0.162 4.162 21 C -0.075 4.075 22 H 0.098 0.902 23 C -0.122 4.122 24 H 0.048 0.952 25 H 0.019 0.981 26 H 0.048 0.952 27 H 0.263 0.737 28 H 0.326 0.674 29 H 0.062 0.938 30 H 0.018 0.982 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.068 0.932 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 1.924 18.067 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.071 3.929 3 H 0.053 0.947 4 C -0.529 4.529 5 H 0.094 0.906 6 C -0.132 4.132 7 N -0.541 5.541 8 Si 0.704 3.296 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.194 1.194 12 N -0.305 5.305 13 C -0.065 4.065 14 C -0.102 4.102 15 H 0.100 0.900 16 C -0.150 4.150 17 C -0.099 4.099 18 H 0.113 0.887 19 C -0.189 4.189 20 C -0.180 4.180 21 C -0.093 4.093 22 H 0.116 0.884 23 C -0.160 4.160 24 H 0.067 0.933 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.087 0.913 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.767 2.029 17.674 17.878 hybrid contribution -0.830 1.046 0.110 1.340 sum -2.597 3.076 17.784 18.234 Atomic orbital electron populations 1.22640 1.01124 1.00682 0.98543 1.19656 0.89297 0.94660 0.89328 0.94687 1.20883 1.42484 0.95695 0.93827 0.90645 1.24979 0.94847 0.97999 0.95412 1.69899 1.46905 1.35577 1.01691 0.86899 0.78882 0.86889 0.76950 1.20196 1.21568 1.19393 1.60902 1.57900 1.08871 1.02795 1.21981 0.98118 0.95806 0.90592 1.22357 0.99421 0.95355 0.93060 0.90000 1.22803 0.98953 0.98817 0.94444 1.22983 0.95820 0.95815 0.95268 0.88693 1.24044 0.96282 0.99327 0.99241 1.24057 0.98749 0.98110 0.97099 1.22932 0.94950 0.97453 0.94005 0.88394 1.24081 0.96267 0.95220 1.00410 0.93313 0.96178 0.93308 0.92738 0.85623 0.91909 0.96360 0.91425 0.91521 0.86064 0.85963 0.91324 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 9.16 37.16 0.34 -3.29 16 2 C 0.18 4.26 2.23 -68.86 -0.15 4.11 16 3 H 0.04 0.86 4.95 -51.93 -0.26 0.61 16 4 C -0.49 -13.98 9.19 -34.44 -0.32 -14.30 16 5 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 7 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 8 Si 0.88 21.87 26.99 -169.99 -4.59 17.29 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.27 -6.41 6.82 56.52 0.39 -6.02 16 12 N -0.67 -14.02 6.23 -107.95 -0.67 -14.70 16 13 C 0.06 1.11 4.73 -3.83 -0.02 1.10 16 14 C -0.08 -1.20 2.60 -87.97 -0.23 -1.43 16 15 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 16 C -0.11 -1.47 5.45 -23.85 -0.13 -1.60 16 17 C -0.08 -0.91 5.26 -86.23 -0.45 -1.36 16 18 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 19 C -0.17 -1.87 10.14 -34.87 -0.35 -2.22 16 20 C -0.16 -1.84 10.14 -34.86 -0.35 -2.20 16 21 C -0.07 -0.92 4.68 -86.44 -0.40 -1.32 16 22 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 23 C -0.12 -1.40 6.61 -22.12 -0.15 -1.54 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.02 0.37 7.35 -51.93 -0.38 -0.01 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.33 6.38 7.36 -39.29 -0.29 6.09 16 29 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 30 H 0.02 0.31 6.28 -51.93 -0.33 -0.02 16 31 H 0.07 0.92 7.14 -51.93 -0.37 0.54 16 32 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.90 7.03 -51.93 -0.37 0.53 16 LS Contribution 281.42 15.07 4.24 4.24 Total: -1.00 -30.05 281.42 -8.34 -38.40 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.78 Total: 4.06 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -2.32 Total: -22.15 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.10 Total: -41.84 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.59 Total: 17.29 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.05 -8.34 -38.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378728882.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.007 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds