Wall clock time and date at job start Mon Mar 30 2020 02:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.47270 * 2 1 4 4 C 1.50699 * 109.46801 * 240.00124 * 2 1 3 5 5 H 1.07999 * 120.00254 * 274.99169 * 4 2 1 6 6 C 1.37878 * 119.99950 * 94.99800 * 4 2 1 7 7 N 1.31517 * 119.99753 * 184.91233 * 6 4 2 8 8 Si 1.86797 * 120.00140 * 4.91080 * 6 4 2 9 9 H 1.48500 * 109.47025 * 84.83082 * 8 6 4 10 10 H 1.48501 * 109.47193 * 204.82837 * 8 6 4 11 11 H 1.48497 * 109.47244 * 324.83286 * 8 6 4 12 12 N 1.46899 * 109.47101 * 119.99737 * 2 1 3 13 13 C 1.46891 * 111.00376 * 274.99864 * 12 2 1 14 14 C 1.53000 * 109.47486 * 179.97438 * 13 12 2 15 15 H 1.09005 * 110.51468 * 54.29983 * 14 13 12 16 16 C 1.54837 * 110.58129 * 291.51913 * 14 13 12 17 17 C 1.56550 * 103.51218 * 241.48074 * 16 14 13 18 18 H 1.09003 * 116.92941 * 163.48130 * 17 16 14 19 19 C 1.53352 * 104.02424 * 293.24355 * 17 16 14 20 20 C 1.31797 * 108.42258 * 70.15302 * 19 17 16 21 21 C 1.53355 * 108.42614 * 359.97438 * 20 19 17 22 22 H 1.08997 * 116.99063 * 160.11863 * 21 20 19 23 23 C 1.57256 * 99.79953 * 33.33909 * 21 20 19 24 24 H 1.08995 * 109.46702 * 175.04869 * 1 2 3 25 25 H 1.08994 * 109.46801 * 295.04428 * 1 2 3 26 26 H 1.08997 * 109.46821 * 55.04203 * 1 2 3 27 27 H 0.97003 * 119.99747 * 180.02562 * 7 6 4 28 28 H 1.00898 * 110.99798 * 38.96125 * 12 2 1 29 29 H 1.08999 * 109.47129 * 300.00444 * 13 12 2 30 30 H 1.09001 * 109.46898 * 59.99984 * 13 12 2 31 31 H 1.08998 * 110.58210 * 359.97438 * 16 14 13 32 32 H 1.08994 * 110.58281 * 122.90231 * 16 14 13 33 33 H 1.08006 * 125.79270 * 250.14425 * 19 17 16 34 34 H 1.08004 * 125.78663 * 180.02562 * 20 19 17 35 35 H 1.08997 * 112.52524 * 66.63709 * 23 21 20 36 36 H 1.08999 * 112.52762 * 194.50461 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1356 -1.7854 -1.2291 6 6 2.3602 0.0121 -2.3581 7 7 2.7058 -0.6132 -3.4623 8 14 2.3133 1.8791 -2.3175 9 1 3.5989 2.3950 -1.7823 10 1 2.1056 2.3991 -3.6929 11 1 1.1984 2.3274 -1.4451 12 7 2.0197 -0.6924 1.1995 13 6 2.0826 0.2226 2.3468 14 6 2.5951 -0.5331 3.5745 15 1 3.5455 -1.0196 3.3543 16 6 1.5496 -1.5714 4.0503 17 6 1.1952 -1.0960 5.4991 18 1 0.2841 -1.4988 5.9418 19 6 2.4905 -1.3162 6.2898 20 6 3.3819 -0.4349 5.8827 21 6 2.7424 0.4331 4.7922 22 1 3.2094 1.3969 4.5898 23 6 1.2581 0.4637 5.3106 24 1 -0.3632 -1.0238 -0.0887 25 1 -0.3633 0.4350 0.9310 26 1 -0.3633 0.5888 -0.8422 27 1 2.9368 -0.1048 -4.2555 28 1 1.4497 -1.4979 1.4100 29 1 2.7589 1.0462 2.1181 30 1 1.0872 0.6163 2.5525 31 1 0.6668 -1.5465 3.4115 32 1 1.9832 -2.5712 4.0683 33 1 2.6460 -2.0662 7.0513 34 1 4.3919 -0.3406 6.2537 35 1 1.1558 1.0023 6.2526 36 1 0.5590 0.8214 4.5547 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378728882.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:18 Heat of formation + Delta-G solvation = 7.842369 kcal Electronic energy + Delta-G solvation = -15220.166482 eV Core-core repulsion = 12896.704876 eV Total energy + Delta-G solvation = -2323.461606 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.60262 -37.85751 -34.65833 -32.83045 -30.32886 -29.52498 -28.36627 -27.25096 -25.05774 -22.03550 -21.34591 -20.75650 -19.03559 -18.74684 -17.28668 -16.81733 -16.62228 -15.61210 -15.37256 -14.63789 -14.45043 -14.19718 -13.83390 -13.39192 -13.09747 -12.95055 -12.86804 -12.62477 -12.27265 -12.17991 -12.11301 -11.84006 -11.77619 -11.56090 -11.46990 -11.24846 -10.96782 -10.66382 -9.77045 -8.94803 -8.26176 -6.27902 1.33514 1.35038 1.39352 1.44760 2.35107 3.04522 3.48915 3.61240 3.64492 3.92768 4.17271 4.21878 4.34319 4.44693 4.49121 4.52198 4.58174 4.69107 4.73764 4.79332 4.87124 4.90041 4.99972 5.03379 5.12184 5.19141 5.30599 5.33695 5.41223 5.45405 5.58626 5.69225 6.08291 6.12774 6.69618 6.77778 6.82084 7.36108 8.91524 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.049362 B = 0.006373 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.102370 B = 4392.792913 C = 4463.148739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.181 3.819 3 H 0.033 0.967 4 C -0.497 4.497 5 H 0.030 0.970 6 C 0.008 3.992 7 N -0.952 5.952 8 Si 0.943 3.057 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.246 1.246 12 N -0.690 5.690 13 C 0.069 3.931 14 C -0.081 4.081 15 H 0.061 0.939 16 C -0.113 4.113 17 C -0.077 4.077 18 H 0.113 0.887 19 C -0.169 4.169 20 C -0.173 4.173 21 C -0.076 4.076 22 H 0.101 0.899 23 C -0.119 4.119 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.265 0.735 28 H 0.332 0.668 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.082 0.918 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.378 3.417 20.425 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.072 3.928 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.048 0.952 6 C -0.188 4.188 7 N -0.593 5.593 8 Si 0.767 3.233 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.170 1.170 12 N -0.321 5.321 13 C -0.060 4.060 14 C -0.100 4.100 15 H 0.080 0.920 16 C -0.151 4.151 17 C -0.095 4.095 18 H 0.131 0.869 19 C -0.186 4.186 20 C -0.191 4.191 21 C -0.095 4.095 22 H 0.120 0.880 23 C -0.156 4.156 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.150 0.850 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.101 0.899 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.659 3.517 20.065 20.544 hybrid contribution -0.530 0.459 -0.593 0.918 sum -3.189 3.976 19.472 20.128 Atomic orbital electron populations 1.22476 0.98918 1.00898 0.99936 1.19487 0.90817 0.93858 0.88603 0.94884 1.21181 1.42221 0.93999 0.96182 0.95156 1.25867 0.94637 1.03495 0.94845 1.70058 1.48817 1.37788 1.02644 0.85814 0.79733 0.80225 0.77497 1.19660 1.21165 1.16956 1.60670 1.58212 1.09766 1.03403 1.21996 0.98702 0.95153 0.90158 1.22260 0.98701 0.96059 0.92935 0.92029 1.22767 0.98198 0.98215 0.95871 1.23042 0.96805 0.95682 0.93954 0.86909 1.24260 0.95830 0.99316 0.99228 1.24174 0.99545 0.98287 0.97066 1.22959 0.96156 0.97258 0.93145 0.88041 1.24074 0.95217 0.95445 1.00891 0.93451 0.92953 0.93965 0.92639 0.84956 0.92841 0.95052 0.91930 0.91924 0.84306 0.84802 0.89905 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.64 9.16 71.98 0.66 -5.98 16 2 C 0.18 8.50 2.23 44.17 0.10 8.60 16 3 H 0.03 1.57 4.95 -2.38 -0.01 1.55 16 4 C -0.50 -28.98 9.19 25.60 0.24 -28.74 16 5 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 6 C 0.01 0.48 5.47 84.65 0.46 0.94 16 7 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 8 Si 0.94 44.92 26.99 68.60 1.85 46.78 16 9 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 11 H -0.25 -10.71 6.82 99.48 0.68 -10.03 16 12 N -0.69 -28.35 6.23 -495.46 -3.09 -31.43 16 13 C 0.07 2.27 4.73 86.30 0.41 2.68 16 14 C -0.08 -2.22 2.60 -9.07 -0.02 -2.25 16 15 H 0.06 1.94 8.09 -2.38 -0.02 1.92 16 16 C -0.11 -2.76 5.45 32.46 0.18 -2.58 16 17 C -0.08 -1.50 5.26 -7.95 -0.04 -1.54 16 18 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 19 C -0.17 -3.19 10.14 25.79 0.26 -2.93 16 20 C -0.17 -3.51 10.14 25.79 0.26 -3.24 16 21 C -0.08 -1.72 4.68 -8.08 -0.04 -1.75 16 22 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 23 C -0.12 -2.36 6.61 33.58 0.22 -2.14 16 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.05 1.79 7.35 -2.39 -0.02 1.77 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 28 H 0.33 12.89 7.36 -89.70 -0.66 12.23 16 29 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 30 H 0.03 0.96 6.28 -2.39 -0.01 0.95 16 31 H 0.06 1.58 7.14 -2.39 -0.02 1.57 16 32 H 0.06 1.56 8.09 -2.39 -0.02 1.54 16 33 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.47 7.03 -2.39 -0.02 1.46 16 Total: -1.00 -65.39 281.42 2.10 -63.29 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.36 Total: 20.63 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 2.68 Total: -38.94 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -2.79 Total: -91.75 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.85 Total: 46.78 kcal Total: -65.39 2.10 -63.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378728882.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.129 kcal (2) G-P(sol) polarization free energy of solvation -65.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds