Wall clock time and date at job start Mon Mar 30 2020 03:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47229 * 326.87408 * 3 2 1 5 5 C 1.36936 * 119.99847 * 263.93894 * 4 3 2 6 6 H 1.08000 * 119.99956 * 199.81248 * 5 4 3 7 7 C 1.38808 * 120.00202 * 19.81921 * 5 4 3 8 8 N 1.31623 * 120.00217 * 21.95631 * 7 5 4 9 9 Si 1.86800 * 120.00106 * 201.96161 * 7 5 4 10 10 H 1.48498 * 109.47221 * 89.99923 * 9 7 5 11 11 H 1.48502 * 109.47199 * 209.99651 * 9 7 5 12 12 H 1.48504 * 109.47312 * 329.99532 * 9 7 5 13 13 C 1.46503 * 120.00286 * 83.93682 * 4 3 2 14 14 C 1.50694 * 109.47152 * 89.99876 * 13 4 3 15 15 C 1.33388 * 125.20180 * 90.00118 * 14 13 4 16 16 C 1.38423 * 114.92274 * 179.97438 * 15 14 13 17 17 C 1.33390 * 114.91837 * 359.97438 * 16 15 14 18 18 S 1.75883 * 109.59567 * 359.75821 * 17 16 15 19 19 H 1.08996 * 109.46999 * 206.87396 * 3 2 1 20 20 H 1.08998 * 109.47115 * 86.87099 * 3 2 1 21 21 H 0.97000 * 120.00147 * 179.97438 * 8 7 5 22 22 H 1.08998 * 109.47483 * 210.00351 * 13 4 3 23 23 H 1.08999 * 109.46595 * 330.00441 * 13 4 3 24 24 H 1.08000 * 122.53828 * 359.95828 * 15 14 13 25 25 H 1.08004 * 122.54409 * 180.02562 * 16 15 14 26 26 H 1.08009 * 125.20122 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -1.1558 0.7548 5 6 3.4431 -1.0168 2.0723 6 1 4.0874 -1.7458 2.5412 7 6 2.9658 0.0609 2.8054 8 7 1.8797 0.6935 2.4146 9 14 3.8650 0.6138 4.3466 10 1 4.8862 1.6299 3.9863 11 1 2.8934 1.2054 5.3012 12 1 4.5301 -0.5544 4.9777 13 6 3.2153 -2.4611 0.1001 14 6 4.5877 -2.5956 -0.5075 15 6 5.6572 -3.0971 0.1122 16 6 6.8139 -3.1211 -0.6478 17 6 6.6836 -2.6395 -1.8849 18 16 5.0224 -2.1234 -2.1451 19 1 2.9708 0.9175 0.4645 20 1 2.9713 -0.0553 -1.0261 21 1 1.5460 1.4464 2.9271 22 1 3.0643 -3.2514 0.8353 23 1 2.4616 -2.5444 -0.6829 24 1 5.6232 -3.4569 1.1299 25 1 7.7507 -3.5016 -0.2683 26 1 7.4759 -2.5800 -2.6165 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379372869.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:15 Heat of formation + Delta-G solvation = 69.136008 kcal Electronic energy + Delta-G solvation = -12572.608174 eV Core-core repulsion = 10357.465231 eV Total energy + Delta-G solvation = -2215.142943 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.95693 -37.79594 -36.16789 -33.64144 -31.14418 -28.76391 -27.26668 -24.52407 -22.95166 -20.03250 -19.16855 -18.23019 -17.30017 -17.00693 -16.13717 -15.64959 -15.59594 -14.31401 -13.94738 -13.86102 -13.63867 -13.34184 -13.14700 -13.06855 -12.90948 -12.72664 -12.24657 -12.00308 -11.91917 -11.72013 -11.47567 -10.68131 -9.42411 -9.17485 -9.05538 -7.94949 -5.35510 0.31101 0.95721 1.32274 1.51648 1.55178 1.61745 2.02383 2.30562 2.46497 2.58750 3.25332 3.77497 3.84111 4.19668 4.39025 4.51307 4.79179 4.90688 4.91019 4.98969 5.16190 5.43609 5.65129 5.67922 5.81883 6.21509 7.00475 7.27320 7.71128 8.13283 9.11490 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.026864 B = 0.010609 C = 0.008179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.020532 B = 2638.651032 C = 3422.658836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C 0.260 3.740 3 C 0.262 3.738 4 N -0.583 5.583 5 C -0.259 4.259 6 H 0.083 0.917 7 C -0.040 4.040 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.283 1.283 11 H -0.306 1.306 12 H -0.270 1.270 13 C 0.207 3.793 14 C -0.180 4.180 15 C -0.147 4.147 16 C -0.139 4.139 17 C -0.220 4.220 18 S 0.078 5.922 19 H 0.095 0.905 20 H 0.094 0.906 21 H 0.250 0.750 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.133 0.867 25 H 0.156 0.844 26 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.464 -5.848 -7.890 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.223 5.223 2 C -0.058 4.058 3 C 0.132 3.868 4 N -0.303 5.303 5 C -0.388 4.388 6 H 0.100 0.900 7 C -0.236 4.236 8 N -0.574 5.574 9 Si 0.794 3.206 10 H -0.210 1.210 11 H -0.234 1.234 12 H -0.195 1.195 13 C 0.080 3.920 14 C -0.299 4.299 15 C -0.178 4.178 16 C -0.169 4.169 17 C -0.355 4.355 18 S 0.340 5.660 19 H 0.112 0.888 20 H 0.112 0.888 21 H 0.060 0.940 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.151 0.849 25 H 0.174 0.826 26 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.950 -5.110 -9.007 13.687 hybrid contribution 1.177 -0.030 2.389 2.663 sum 10.127 -5.140 -6.618 13.144 Atomic orbital electron populations 1.80795 1.15556 1.11380 1.14559 1.30977 0.96742 0.90171 0.87886 1.18322 0.79042 0.93263 0.96200 1.44154 1.73676 1.04144 1.08337 1.19475 1.23159 1.09372 0.86838 0.89952 1.25519 0.96490 1.00673 1.00899 1.70041 1.20827 1.24143 1.42392 0.85310 0.77641 0.78431 0.79267 1.20953 1.23404 1.19450 1.19413 0.89417 0.87705 0.95466 1.25534 1.02003 1.05240 0.97156 1.20271 0.92362 1.03784 1.01364 1.20360 0.99713 1.02920 0.93936 1.25833 0.99682 1.08097 1.01875 1.84059 1.05427 1.63906 1.12575 0.88761 0.88792 0.94010 0.91162 0.92430 0.84938 0.82625 0.79741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -28.01 18.54 20.00 0.37 -27.64 15 2 C 0.26 12.47 13.56 89.44 1.21 13.68 15 3 C 0.26 11.09 5.41 84.57 0.46 11.54 15 4 N -0.58 -25.49 2.47 -716.94 -1.77 -27.27 15 5 C -0.26 -12.61 9.63 84.03 0.81 -11.80 15 6 H 0.08 3.90 7.92 -2.91 -0.02 3.88 15 7 C -0.04 -2.04 4.83 84.86 0.41 -1.63 15 8 N -0.93 -51.13 9.60 21.65 0.21 -50.92 15 9 Si 0.96 42.34 29.61 68.60 2.03 44.38 15 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 11 H -0.31 -14.10 7.11 99.48 0.71 -13.40 15 12 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 13 C 0.21 7.58 6.16 85.63 0.53 8.11 15 14 C -0.18 -5.72 6.09 24.59 0.15 -5.57 15 15 C -0.15 -4.37 10.05 21.22 0.21 -4.16 15 16 C -0.14 -3.40 10.18 21.22 0.22 -3.19 15 17 C -0.22 -5.02 11.23 66.72 0.75 -4.27 15 18 S 0.08 2.09 23.33 -56.49 -1.32 0.77 15 19 H 0.09 4.34 6.61 -2.39 -0.02 4.32 15 20 H 0.09 3.26 8.12 -2.39 -0.02 3.25 15 21 H 0.25 13.87 8.31 -92.71 -0.77 13.10 15 22 H 0.07 2.59 8.04 -2.39 -0.02 2.57 15 23 H 0.06 2.01 8.07 -2.39 -0.02 1.99 15 24 H 0.13 3.91 8.06 -2.91 -0.02 3.89 15 25 H 0.16 2.97 8.06 -2.91 -0.02 2.95 15 26 H 0.19 3.02 8.06 -2.91 -0.02 3.00 15 Total: -1.00 -59.99 253.25 5.45 -54.54 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 1.18 Total: 3.42 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 4.74 Total: 2.72 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -1.19 Total: -105.83 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -1.32 Total: 0.77 kcal Total: -59.99 5.45 -54.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379372869.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.674 kcal (2) G-P(sol) polarization free energy of solvation -59.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds