Wall clock time and date at job start Mon Mar 30 2020 02:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46803 * 2 1 4 4 H 1.08993 * 109.47313 * 304.14699 * 3 2 1 5 5 C 1.50703 * 109.46697 * 184.15066 * 3 2 1 6 6 H 1.08005 * 119.99865 * 240.00133 * 5 3 2 7 7 C 1.37874 * 120.00529 * 60.00066 * 5 3 2 8 8 N 1.31521 * 119.99512 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00480 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47024 * 90.00170 * 9 7 5 11 11 H 1.48495 * 109.47214 * 210.00018 * 9 7 5 12 12 H 1.48503 * 109.47067 * 330.00227 * 9 7 5 13 13 N 1.46894 * 109.47238 * 64.15488 * 3 2 1 14 14 C 1.46906 * 111.00044 * 205.91697 * 13 3 2 15 15 H 1.08998 * 110.51394 * 328.02435 * 14 13 3 16 16 C 1.54827 * 110.58479 * 90.97716 * 14 13 3 17 17 C 1.56193 * 103.68656 * 118.55113 * 16 14 13 18 18 H 1.08999 * 116.29437 * 195.98916 * 17 16 14 19 19 C 1.53362 * 104.07629 * 66.64392 * 17 16 14 20 20 C 1.33834 * 108.70841 * 290.26722 * 19 17 16 21 21 C 1.53357 * 107.33953 * 359.48062 * 20 19 17 22 22 H 1.09003 * 116.33545 * 200.06129 * 21 20 19 23 23 C 1.57256 * 100.39761 * 323.67589 * 17 16 14 24 24 H 1.09002 * 109.46921 * 54.71333 * 1 2 3 25 25 H 1.08995 * 109.47269 * 174.71532 * 1 2 3 26 26 H 1.08995 * 109.46825 * 294.71939 * 1 2 3 27 27 H 1.09001 * 109.46828 * 240.00049 * 2 1 3 28 28 H 1.08992 * 109.47120 * 119.99765 * 2 1 3 29 29 H 0.97001 * 119.99847 * 180.02562 * 8 7 5 30 30 H 1.00902 * 111.00560 * 81.95969 * 13 3 2 31 31 H 1.08997 * 110.58356 * 237.10247 * 16 14 13 32 32 H 1.08998 * 110.58248 * 359.84564 * 16 14 13 33 33 H 1.07998 * 125.78544 * 109.87888 * 19 17 16 34 34 H 1.07995 * 126.87297 * 179.28766 * 20 19 17 35 35 H 1.08996 * 111.78112 * 301.11727 * 23 17 16 36 36 H 1.09000 * 113.26966 * 173.24762 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6172 1.9773 -0.8504 5 6 3.5435 1.4437 -0.1028 6 1 4.1379 1.8922 0.6795 7 6 4.1603 0.8724 -1.1956 8 7 3.4364 0.3268 -2.1485 9 14 6.0239 0.8746 -1.3234 10 1 6.5650 -0.3538 -0.6881 11 1 6.4219 0.9086 -2.7536 12 1 6.5662 2.0706 -0.6300 13 7 1.6339 2.1054 1.2464 14 6 1.5364 3.5596 1.0617 15 1 2.2646 3.9008 0.3259 16 6 0.1018 3.9596 0.6387 17 6 -0.3785 4.8916 1.7964 18 1 -1.4508 5.0795 1.8518 19 6 0.5233 6.1265 1.6796 20 6 1.7671 5.7851 2.0367 21 6 1.7410 4.3007 2.4213 22 1 2.5628 3.9481 3.0445 23 6 0.2951 4.1839 3.0286 24 1 -0.3633 0.5937 -0.8389 25 1 -0.3633 -1.0232 -0.0946 26 1 -0.3633 0.4297 0.9335 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8703 -0.0755 -2.9172 30 1 2.2659 1.8781 1.9994 31 1 0.1180 4.5008 -0.3072 32 1 -0.5354 3.0784 0.5637 33 1 0.2108 7.1085 1.3564 34 1 2.6361 6.4262 2.0519 35 1 -0.0329 3.1493 3.1298 36 1 0.1864 4.7423 3.9584 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382142178.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:58 Heat of formation + Delta-G solvation = 22.545603 kcal Electronic energy + Delta-G solvation = -15596.846868 eV Core-core repulsion = 13274.022842 eV Total energy + Delta-G solvation = -2322.824026 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.07128 -35.68234 -32.25451 -30.98874 -29.16500 -27.82199 -26.91208 -25.32518 -22.66790 -20.34343 -19.70777 -19.28805 -17.57773 -16.53306 -16.09169 -15.08062 -14.52736 -14.26238 -13.40294 -12.78327 -12.47144 -12.33763 -11.90768 -11.32561 -11.28666 -11.18730 -10.97363 -10.87697 -10.84719 -10.79275 -10.56397 -10.31050 -10.09938 -9.88383 -9.55199 -9.40542 -8.99979 -8.48514 -8.35708 -7.19335 -5.97604 -4.10492 2.44951 3.27245 3.34447 3.37013 4.40589 4.89587 4.94763 5.06769 5.23673 5.28682 5.55232 5.67580 5.80540 5.83020 5.92444 6.06548 6.30890 6.39399 6.42025 6.49130 6.52334 6.54688 6.61000 6.69944 6.75891 6.87303 7.17158 7.20311 7.24287 7.49574 7.64000 7.80391 8.12774 8.20146 8.38841 8.72345 9.03473 9.57074 11.02289 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.030061 B = 0.008937 C = 0.007526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.229284 B = 3132.178469 C = 3719.746058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.680 5.680 14 C 0.097 3.903 15 H 0.051 0.949 16 C -0.106 4.106 17 C -0.078 4.078 18 H 0.092 0.908 19 C -0.175 4.175 20 C -0.166 4.166 21 C -0.082 4.082 22 H 0.092 0.908 23 C -0.110 4.110 24 H 0.036 0.964 25 H 0.023 0.977 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.327 0.673 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 7.064 6.962 11.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.309 5.309 14 C -0.014 4.014 15 H 0.069 0.931 16 C -0.145 4.145 17 C -0.097 4.097 18 H 0.110 0.890 19 C -0.193 4.193 20 C -0.184 4.184 21 C -0.101 4.101 22 H 0.110 0.890 23 C -0.148 4.148 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.101 0.899 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.143 6.839 6.642 11.341 hybrid contribution 2.196 0.335 -0.382 2.254 sum -3.947 7.175 6.260 10.307 Atomic orbital electron populations 1.21689 0.99052 0.98184 1.00326 1.21491 0.92040 0.99331 1.01580 1.19171 0.92507 0.91058 0.86505 0.95100 1.21888 0.92799 1.37783 1.05788 0.92946 1.24935 0.97878 0.95084 0.95670 1.69884 1.34809 1.38100 1.09567 0.86673 0.86237 0.78357 0.77179 1.20663 1.21237 1.20115 1.60955 1.54970 1.05407 1.09590 1.22515 0.95381 0.89370 0.94155 0.93147 1.22740 0.97371 0.98308 0.96052 1.22875 0.97345 0.93100 0.96366 0.89010 1.24599 0.95720 0.97715 1.01225 1.24610 0.96867 0.96295 1.00645 1.23093 0.97273 0.92721 0.97033 0.89014 1.23954 0.94023 1.00786 0.95999 0.94515 0.95773 0.93459 0.89298 0.95161 0.92938 0.85638 0.92768 0.90407 0.86401 0.85888 0.89900 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.73 37.16 0.36 -2.42 16 2 C -0.11 -2.54 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.31 1.85 -68.87 -0.13 5.18 16 4 H 0.03 0.85 7.84 -51.93 -0.41 0.45 16 5 C -0.54 -14.66 8.36 -34.44 -0.29 -14.95 16 6 H 0.05 1.41 7.73 -52.48 -0.41 1.00 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -25.14 11.30 55.43 0.63 -24.52 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -14.02 5.45 -98.17 -0.53 -14.55 16 14 C 0.10 1.82 2.36 -65.03 -0.15 1.67 16 15 H 0.05 1.12 7.66 -51.93 -0.40 0.72 16 16 C -0.11 -1.82 6.05 -24.06 -0.15 -1.96 16 17 C -0.08 -1.11 5.26 -86.41 -0.45 -1.57 16 18 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 19 C -0.17 -2.41 10.18 -34.52 -0.35 -2.77 16 20 C -0.17 -2.42 10.30 -34.52 -0.36 -2.78 16 21 C -0.08 -1.30 4.59 -86.40 -0.40 -1.70 16 22 H 0.09 1.42 8.12 -51.93 -0.42 1.00 16 23 C -0.11 -1.57 6.67 -22.10 -0.15 -1.72 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.92 7.88 -51.93 -0.41 0.51 16 27 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.33 6.72 8.08 -39.29 -0.32 6.40 16 31 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.08 1.40 7.98 -51.93 -0.41 0.99 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 286.23 15.07 4.31 4.31 Total: -1.00 -27.28 286.23 -8.93 -36.21 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.02 Total: 6.26 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -2.30 Total: -23.97 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.09 Total: -39.07 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.28 -8.93 -36.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382142178.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.760 kcal (2) G-P(sol) polarization free energy of solvation -27.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds