Wall clock time and date at job start Mon Mar 30 2020 02:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46658 * 2 1 4 4 H 1.08997 * 109.47334 * 55.15723 * 3 2 1 5 5 C 1.50701 * 109.46704 * 175.15279 * 3 2 1 6 6 H 1.08004 * 119.99479 * 120.00046 * 5 3 2 7 7 C 1.37871 * 120.00474 * 300.00321 * 5 3 2 8 8 N 1.31515 * 120.00370 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 119.99726 * 0.02562 * 7 5 3 10 10 H 1.48492 * 109.47461 * 89.99991 * 9 7 5 11 11 H 1.48503 * 109.46924 * 210.00312 * 9 7 5 12 12 H 1.48494 * 109.47174 * 329.99471 * 9 7 5 13 13 N 1.46893 * 109.47158 * 295.15169 * 3 2 1 14 14 C 1.46902 * 110.99890 * 154.16138 * 13 3 2 15 15 H 1.09006 * 110.52025 * 33.23628 * 14 13 3 16 16 C 1.54834 * 110.58647 * 270.45299 * 14 13 3 17 17 C 1.56550 * 103.51812 * 241.48407 * 16 14 13 18 18 H 1.09002 * 116.88841 * 196.40076 * 17 16 14 19 19 C 1.53362 * 104.15629 * 66.54948 * 17 16 14 20 20 C 1.31792 * 108.42286 * 289.91197 * 19 17 16 21 21 C 1.53361 * 108.42825 * 0.02562 * 20 19 17 22 22 H 1.08998 * 116.98680 * 199.88440 * 21 20 19 23 23 C 1.57252 * 100.38003 * 323.56500 * 17 16 14 24 24 H 1.08996 * 109.47730 * 296.35839 * 1 2 3 25 25 H 1.09002 * 109.47164 * 56.35669 * 1 2 3 26 26 H 1.09005 * 109.46973 * 176.35665 * 1 2 3 27 27 H 1.08995 * 109.47185 * 240.00164 * 2 1 3 28 28 H 1.08997 * 109.46856 * 119.99657 * 2 1 3 29 29 H 0.97001 * 120.00187 * 180.02562 * 8 7 5 30 30 H 1.00895 * 111.00696 * 278.11754 * 13 3 2 31 31 H 1.09003 * 110.58162 * 359.97438 * 16 14 13 32 32 H 1.08998 * 110.58697 * 122.89234 * 16 14 13 33 33 H 1.08002 * 125.78376 * 109.91427 * 19 17 16 34 34 H 1.08005 * 125.78546 * 179.97438 * 20 19 17 35 35 H 1.09003 * 112.52679 * 300.99749 * 23 17 16 36 36 H 1.09004 * 112.60782 * 173.15163 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6075 1.9808 0.8434 5 6 3.5421 1.4443 0.1201 6 1 4.1454 1.8896 -0.6573 7 6 4.1464 0.8774 1.2221 8 7 5.4573 0.8794 1.3270 9 14 3.1029 0.1065 2.5661 10 1 2.8813 -1.3292 2.2586 11 1 3.8035 0.2313 3.8695 12 1 1.7944 0.8049 2.6387 13 7 1.6481 2.1004 -1.2536 14 6 1.5503 3.5554 -1.0764 15 1 2.2860 3.9023 -0.3506 16 6 0.1208 3.9553 -0.6359 17 6 -0.3748 4.8802 -1.7976 18 1 -1.2439 5.5056 -1.5932 19 6 -0.4815 3.9410 -3.0053 20 6 0.7363 3.6004 -3.3768 21 6 1.7386 4.2885 -2.4421 22 1 2.7634 4.3853 -2.8007 23 6 0.9623 5.6263 -2.1559 24 1 -0.3634 0.4562 0.9208 25 1 -0.3633 0.5694 -0.8555 26 1 -0.3633 -1.0256 -0.0653 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8824 0.4802 2.1022 30 1 2.2879 1.8692 -1.9987 31 1 -0.5143 3.0737 -0.5497 32 1 0.1491 4.5022 0.3066 33 1 -1.3989 3.6142 -3.4721 34 1 0.9859 2.9467 -4.1996 35 1 1.3743 6.1749 -1.3089 36 1 0.8680 6.2526 -3.0431 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382142202.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:00 Heat of formation + Delta-G solvation = 14.876736 kcal Electronic energy + Delta-G solvation = -15741.613286 eV Core-core repulsion = 13418.456713 eV Total energy + Delta-G solvation = -2323.156573 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.45501 -37.72250 -34.29068 -33.06315 -30.77886 -29.36542 -28.83104 -26.83542 -24.25689 -21.99226 -21.45471 -20.97286 -19.05388 -18.54347 -17.42404 -17.00277 -16.57248 -15.64807 -15.16198 -14.70843 -14.33707 -13.95288 -13.72789 -13.41049 -13.26910 -12.97455 -12.56378 -12.46333 -12.22143 -12.14572 -11.98554 -11.94740 -11.64114 -11.49419 -11.31614 -11.19303 -10.97542 -10.69527 -9.64642 -8.99022 -8.35460 -6.40016 1.26940 1.31714 1.42565 1.57763 2.27279 3.00067 3.49236 3.71233 3.74168 3.93625 4.27278 4.37402 4.46338 4.50629 4.51053 4.55652 4.63500 4.75808 4.83288 4.92349 5.03595 5.05050 5.12117 5.15177 5.21620 5.28541 5.38216 5.40844 5.49286 5.54607 5.64002 5.70611 6.10858 6.26445 6.45668 6.66323 6.83202 7.29300 8.80809 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.036213 B = 0.009162 C = 0.008308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.025664 B = 3055.234172 C = 3369.588251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C 0.191 3.809 4 H 0.019 0.981 5 C -0.543 4.543 6 H 0.031 0.969 7 C 0.014 3.986 8 N -0.947 5.947 9 Si 0.951 3.049 10 H -0.266 1.266 11 H -0.300 1.300 12 H -0.249 1.249 13 N -0.652 5.652 14 C 0.084 3.916 15 H 0.016 0.984 16 C -0.107 4.107 17 C -0.067 4.067 18 H 0.119 0.881 19 C -0.165 4.165 20 C -0.149 4.149 21 C -0.090 4.090 22 H 0.085 0.915 23 C -0.113 4.113 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.328 0.672 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.070 0.930 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.736 6.021 -6.193 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.154 4.154 3 C 0.081 3.919 4 H 0.037 0.963 5 C -0.582 4.582 6 H 0.050 0.950 7 C -0.184 4.184 8 N -0.587 5.587 9 Si 0.778 3.222 10 H -0.192 1.192 11 H -0.228 1.228 12 H -0.173 1.173 13 N -0.280 5.280 14 C -0.026 4.026 15 H 0.034 0.966 16 C -0.145 4.145 17 C -0.085 4.085 18 H 0.137 0.863 19 C -0.183 4.183 20 C -0.167 4.167 21 C -0.108 4.108 22 H 0.103 0.897 23 C -0.151 4.151 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.145 0.855 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.143 0.857 35 H 0.088 0.912 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.277 5.858 -5.980 16.550 hybrid contribution 1.652 -0.449 0.931 1.948 sum -12.625 5.409 -5.049 14.634 Atomic orbital electron populations 1.21638 0.94535 1.01125 1.01730 1.21735 0.96530 0.97675 0.99449 1.19420 0.90830 0.91994 0.89645 0.96262 1.22097 0.92957 1.37392 1.05754 0.95031 1.25861 0.95790 0.96159 1.00542 1.70065 1.10740 1.46960 1.30972 0.85812 0.79375 0.79604 0.77393 1.19198 1.22791 1.17330 1.60890 1.53452 1.06946 1.06711 1.22640 0.96224 0.88289 0.95497 0.96587 1.22805 0.95271 0.99179 0.97252 1.22980 0.97516 0.94894 0.93156 0.86336 1.24038 0.97545 1.00157 0.96569 1.23785 0.94777 0.99911 0.98252 1.23112 0.98016 0.95736 0.93979 0.89661 1.24007 0.94435 0.95300 1.01376 0.94141 0.91101 0.92545 0.92846 0.95161 0.92618 0.85490 0.91371 0.92360 0.84447 0.85707 0.91169 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 9.84 71.98 0.71 -3.87 16 2 C -0.12 -4.95 5.11 30.60 0.16 -4.79 16 3 C 0.19 8.92 1.44 44.17 0.06 8.99 16 4 H 0.02 0.96 6.89 -2.39 -0.02 0.94 16 5 C -0.54 -30.98 8.93 25.60 0.23 -30.75 16 6 H 0.03 2.00 7.97 -2.91 -0.02 1.97 16 7 C 0.01 0.85 5.45 84.65 0.46 1.31 16 8 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 9 Si 0.95 46.03 24.41 68.60 1.67 47.70 16 10 H -0.27 -12.28 6.83 99.48 0.68 -11.60 16 11 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 12 H -0.25 -11.33 6.53 99.48 0.65 -10.68 16 13 N -0.65 -25.93 4.66 -464.56 -2.17 -28.10 16 14 C 0.08 3.05 2.68 46.63 0.12 3.18 16 15 H 0.02 0.70 7.73 -2.38 -0.02 0.68 16 16 C -0.11 -3.25 6.06 32.46 0.20 -3.06 16 17 C -0.07 -1.59 5.26 -7.94 -0.04 -1.63 16 18 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 19 C -0.17 -3.96 10.15 25.79 0.26 -3.69 16 20 C -0.15 -3.99 9.28 25.79 0.24 -3.75 16 21 C -0.09 -2.69 4.84 -8.07 -0.04 -2.73 16 22 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 23 C -0.11 -2.76 6.68 33.60 0.22 -2.54 16 24 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 2.35 7.65 -2.39 -0.02 2.33 16 26 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.03 1.37 3.21 -2.39 -0.01 1.36 16 29 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.33 13.63 7.91 -89.70 -0.71 12.92 16 31 H 0.07 2.19 7.92 -2.39 -0.02 2.17 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 34 H 0.13 3.15 8.06 -2.91 -0.02 3.12 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -63.46 278.06 2.64 -60.82 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.25 Total: 22.45 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 2.58 Total: -43.34 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -1.87 Total: -87.63 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.67 Total: 47.70 kcal Total: -63.46 2.64 -60.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382142202.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.696 kcal (2) G-P(sol) polarization free energy of solvation -63.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds