Wall clock time and date at job start Mon Mar 30 2020 02:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46992 * 2 1 4 4 H 1.08999 * 109.47295 * 54.65967 * 3 2 1 5 5 C 1.50692 * 109.47222 * 174.66100 * 3 2 1 6 6 H 1.08003 * 120.00431 * 119.99907 * 5 3 2 7 7 C 1.37882 * 119.99846 * 299.99835 * 5 3 2 8 8 N 1.31515 * 119.99967 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00219 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46950 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47508 * 119.99908 * 9 7 5 12 12 H 1.48507 * 109.47403 * 240.00394 * 9 7 5 13 13 N 1.46902 * 109.47126 * 294.66199 * 3 2 1 14 14 C 1.46904 * 111.00298 * 153.62754 * 13 3 2 15 15 H 1.09003 * 110.51440 * 325.38224 * 14 13 3 16 16 C 1.54833 * 110.58365 * 88.16584 * 14 13 3 17 17 C 1.56193 * 103.68096 * 118.70079 * 16 14 13 18 18 H 1.09003 * 116.29118 * 195.98826 * 17 16 14 19 19 C 1.53360 * 104.07520 * 66.64894 * 17 16 14 20 20 C 1.31794 * 108.42244 * 289.90859 * 19 17 16 21 21 C 1.53361 * 108.42778 * 0.26724 * 20 19 17 22 22 H 1.09000 * 116.33242 * 199.13935 * 21 20 19 23 23 C 1.57253 * 100.40303 * 323.67925 * 17 16 14 24 24 H 1.09001 * 109.47624 * 56.09483 * 1 2 3 25 25 H 1.09005 * 109.47195 * 176.09378 * 1 2 3 26 26 H 1.08995 * 109.47453 * 296.09178 * 1 2 3 27 27 H 1.08994 * 109.46919 * 240.00124 * 2 1 3 28 28 H 1.08997 * 109.47278 * 120.00210 * 2 1 3 29 29 H 0.97002 * 119.99626 * 179.97438 * 8 7 5 30 30 H 1.00894 * 111.00349 * 29.66693 * 13 3 2 31 31 H 1.09003 * 110.58190 * 0.15906 * 16 14 13 32 32 H 1.08993 * 110.71107 * 237.31724 * 16 14 13 33 33 H 1.08001 * 125.79001 * 109.93746 * 19 17 16 34 34 H 1.07999 * 125.78536 * 179.97438 * 20 19 17 35 35 H 1.08993 * 112.53048 * 173.04867 * 23 17 16 36 36 H 1.09000 * 112.52249 * 300.91676 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6006 1.9832 0.8383 5 6 3.5411 1.4446 0.1322 6 1 4.1507 1.8877 -0.6414 7 6 4.1363 0.8809 1.2409 8 7 3.3939 0.3410 2.1827 9 14 5.9971 0.8828 1.4045 10 1 6.5976 1.5446 0.2184 11 1 6.3853 1.6209 2.6332 12 1 6.4879 -0.5161 1.4915 13 7 1.6583 2.0968 -1.2587 14 6 1.5468 3.5511 -1.0834 15 1 1.1672 3.7880 -0.0895 16 6 2.9158 4.2345 -1.3204 17 6 2.6509 5.1809 -2.5344 18 1 3.5321 5.5641 -3.0491 19 6 1.6750 6.2284 -1.9847 20 6 0.5097 5.6467 -1.7830 21 6 0.6304 4.1697 -2.1780 22 1 -0.3040 3.6436 -2.3736 23 6 1.6534 4.2982 -3.3702 24 1 -0.3634 0.5732 -0.8529 25 1 -0.3634 -1.0253 -0.0700 26 1 -0.3634 0.4519 0.9229 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8127 -0.0559 2.9624 30 1 0.8004 1.7095 -1.6219 31 1 3.6755 3.4940 -1.5705 32 1 3.2163 4.8095 -0.4446 33 1 1.9036 7.2669 -1.7955 34 1 -0.3782 6.1274 -1.3997 35 1 1.2386 4.8324 -4.2250 36 1 2.0835 3.3380 -3.6550 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382142205.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:03 Heat of formation + Delta-G solvation = 29.583542 kcal Electronic energy + Delta-G solvation = -15646.534727 eV Core-core repulsion = 13324.015889 eV Total energy + Delta-G solvation = -2322.518838 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.15589 -35.85928 -32.26093 -31.09961 -29.01120 -27.95916 -26.73747 -25.63665 -22.69256 -20.32853 -19.71452 -19.36100 -17.53109 -16.28631 -16.09858 -15.03110 -14.50764 -14.39767 -13.55536 -12.74622 -12.53257 -12.40983 -11.97865 -11.65932 -11.23856 -11.12768 -10.93157 -10.86889 -10.72389 -10.64484 -10.62078 -10.32142 -10.03735 -9.79655 -9.60371 -9.39083 -8.88671 -8.57407 -8.29561 -7.16544 -5.92227 -3.95135 2.52753 3.33410 3.41482 3.46225 4.48200 4.88720 4.98560 5.10668 5.25992 5.36821 5.54349 5.69455 5.78592 5.85974 5.96565 6.08122 6.18461 6.19969 6.39708 6.42235 6.44975 6.52904 6.58346 6.66735 6.78930 6.87990 7.03292 7.13584 7.23511 7.27496 7.58169 7.82918 7.99463 8.39518 8.46049 8.82827 9.13165 9.69292 11.13401 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.027326 B = 0.009733 C = 0.007796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.435161 B = 2876.047344 C = 3590.692571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.485 4.485 6 H 0.064 0.936 7 C 0.052 3.948 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.102 3.898 15 H 0.037 0.963 16 C -0.100 4.100 17 C -0.084 4.084 18 H 0.092 0.908 19 C -0.166 4.166 20 C -0.172 4.172 21 C -0.084 4.084 22 H 0.090 0.910 23 C -0.109 4.109 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.099 0.901 29 H 0.257 0.743 30 H 0.317 0.683 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.060 0.940 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.719 6.991 -7.359 11.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.524 4.524 6 H 0.082 0.918 7 C -0.148 4.148 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.008 4.008 15 H 0.054 0.946 16 C -0.138 4.138 17 C -0.103 4.103 18 H 0.110 0.890 19 C -0.184 4.184 20 C -0.190 4.190 21 C -0.102 4.102 22 H 0.108 0.892 23 C -0.146 4.146 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.135 0.865 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.039 6.907 -7.397 10.896 hybrid contribution 0.079 0.132 0.942 0.954 sum -3.960 7.038 -6.455 10.338 Atomic orbital electron populations 1.21882 0.99699 0.99402 0.99735 1.21781 0.91160 1.00544 1.03016 1.19218 0.95521 0.89862 0.84314 0.98178 1.21304 0.91197 1.35732 1.04150 0.91764 1.24973 0.97918 0.95867 0.95998 1.69886 1.34483 1.39772 1.09683 0.86540 0.86113 0.77524 0.77823 1.19772 1.21354 1.21243 1.60775 1.36301 1.01323 1.32537 1.22409 0.93990 0.89398 0.95043 0.94554 1.22753 0.98355 0.97104 0.95569 1.22986 0.96490 0.93954 0.96826 0.89010 1.24119 0.95371 0.98109 1.00791 1.24004 0.97716 0.95768 1.01551 1.23056 0.97507 0.93264 0.96407 0.89188 1.24001 0.95032 0.99825 0.95752 0.94600 0.94490 0.93957 0.94105 0.88300 0.93273 0.86518 0.89156 0.92728 0.86373 0.86378 0.92146 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.81 37.16 0.36 -2.55 16 2 C -0.13 -2.98 5.35 -26.73 -0.14 -3.12 16 3 C 0.22 5.40 2.03 -68.87 -0.14 5.26 16 4 H 0.00 0.02 7.43 -51.93 -0.39 -0.37 16 5 C -0.48 -13.19 8.12 -34.44 -0.28 -13.47 16 6 H 0.06 1.77 6.15 -52.48 -0.32 1.44 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.35 16 8 N -0.90 -25.66 11.29 55.43 0.63 -25.04 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.68 -14.18 6.03 -98.51 -0.59 -14.77 16 14 C 0.10 1.95 2.58 -65.37 -0.17 1.78 16 15 H 0.04 0.78 7.41 -51.93 -0.38 0.39 16 16 C -0.10 -1.87 5.49 -24.05 -0.13 -2.01 16 17 C -0.08 -1.28 5.26 -86.41 -0.45 -1.73 16 18 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 19 C -0.17 -2.35 10.14 -34.86 -0.35 -2.71 16 20 C -0.17 -2.47 10.15 -34.86 -0.35 -2.83 16 21 C -0.08 -1.30 4.66 -86.53 -0.40 -1.70 16 22 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 23 C -0.11 -1.61 6.67 -21.89 -0.15 -1.76 16 24 H 0.04 0.63 6.34 -51.93 -0.33 0.30 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.32 6.10 6.17 -39.30 -0.24 5.86 16 31 H 0.09 1.91 6.16 -51.93 -0.32 1.59 16 32 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 LS Contribution 278.78 15.07 4.20 4.20 Total: -1.00 -27.82 278.78 -8.74 -36.56 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.65 Total: 5.97 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.30 Total: -23.48 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.03 Total: -39.81 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.82 -8.74 -36.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382142205.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.145 kcal (2) G-P(sol) polarization free energy of solvation -27.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds