Wall clock time and date at job start Mon Mar 30 2020 02:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46992 * 2 1 4 4 H 1.08999 * 109.47295 * 54.65967 * 3 2 1 5 5 C 1.50692 * 109.47222 * 174.66100 * 3 2 1 6 6 H 1.08003 * 120.00431 * 119.99907 * 5 3 2 7 7 C 1.37882 * 119.99846 * 299.99835 * 5 3 2 8 8 N 1.31515 * 119.99967 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00219 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46950 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47508 * 119.99908 * 9 7 5 12 12 H 1.48507 * 109.47403 * 240.00394 * 9 7 5 13 13 N 1.46902 * 109.47126 * 294.66199 * 3 2 1 14 14 C 1.46904 * 111.00298 * 153.62754 * 13 3 2 15 15 H 1.09003 * 110.51440 * 325.38224 * 14 13 3 16 16 C 1.54833 * 110.58365 * 88.16584 * 14 13 3 17 17 C 1.56193 * 103.68096 * 118.70079 * 16 14 13 18 18 H 1.09003 * 116.29118 * 195.98826 * 17 16 14 19 19 C 1.53360 * 104.07520 * 66.64894 * 17 16 14 20 20 C 1.31794 * 108.42244 * 289.90859 * 19 17 16 21 21 C 1.53361 * 108.42778 * 0.26724 * 20 19 17 22 22 H 1.09000 * 116.33242 * 199.13935 * 21 20 19 23 23 C 1.57253 * 100.40303 * 323.67925 * 17 16 14 24 24 H 1.09001 * 109.47624 * 56.09483 * 1 2 3 25 25 H 1.09005 * 109.47195 * 176.09378 * 1 2 3 26 26 H 1.08995 * 109.47453 * 296.09178 * 1 2 3 27 27 H 1.08994 * 109.46919 * 240.00124 * 2 1 3 28 28 H 1.08997 * 109.47278 * 120.00210 * 2 1 3 29 29 H 0.97002 * 119.99626 * 179.97438 * 8 7 5 30 30 H 1.00894 * 111.00349 * 29.66693 * 13 3 2 31 31 H 1.09003 * 110.58190 * 0.15906 * 16 14 13 32 32 H 1.08993 * 110.71107 * 237.31724 * 16 14 13 33 33 H 1.08001 * 125.79001 * 109.93746 * 19 17 16 34 34 H 1.07999 * 125.78536 * 179.97438 * 20 19 17 35 35 H 1.08993 * 112.53048 * 173.04867 * 23 17 16 36 36 H 1.09000 * 112.52249 * 300.91676 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6006 1.9832 0.8383 5 6 3.5411 1.4446 0.1322 6 1 4.1507 1.8877 -0.6414 7 6 4.1363 0.8809 1.2409 8 7 3.3939 0.3410 2.1827 9 14 5.9971 0.8828 1.4045 10 1 6.5976 1.5446 0.2184 11 1 6.3853 1.6209 2.6332 12 1 6.4879 -0.5161 1.4915 13 7 1.6583 2.0968 -1.2587 14 6 1.5468 3.5511 -1.0834 15 1 1.1672 3.7880 -0.0895 16 6 2.9158 4.2345 -1.3204 17 6 2.6509 5.1809 -2.5344 18 1 3.5321 5.5641 -3.0491 19 6 1.6750 6.2284 -1.9847 20 6 0.5097 5.6467 -1.7830 21 6 0.6304 4.1697 -2.1780 22 1 -0.3040 3.6436 -2.3736 23 6 1.6534 4.2982 -3.3702 24 1 -0.3634 0.5732 -0.8529 25 1 -0.3634 -1.0253 -0.0700 26 1 -0.3634 0.4519 0.9229 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8127 -0.0559 2.9624 30 1 0.8004 1.7095 -1.6219 31 1 3.6755 3.4940 -1.5705 32 1 3.2163 4.8095 -0.4446 33 1 1.9036 7.2669 -1.7955 34 1 -0.3782 6.1274 -1.3997 35 1 1.2386 4.8324 -4.2250 36 1 2.0835 3.3380 -3.6550 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382142205.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:03 Heat of formation + Delta-G solvation = 13.663667 kcal Electronic energy + Delta-G solvation = -15647.225064 eV Core-core repulsion = 13324.015889 eV Total energy + Delta-G solvation = -2323.209176 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.46937 -37.68402 -34.24755 -32.79439 -30.35164 -29.43615 -28.29687 -27.34130 -24.57951 -21.82103 -21.18419 -21.02009 -18.79773 -18.30976 -17.34055 -16.78848 -16.17009 -16.09856 -15.36518 -14.62770 -14.11753 -13.90112 -13.48004 -13.15178 -13.07116 -12.84756 -12.54483 -12.39179 -12.22063 -12.12256 -12.07757 -11.96060 -11.65521 -11.50254 -11.41341 -11.09666 -10.76780 -10.40622 -9.77424 -8.96694 -8.04599 -6.14735 1.38646 1.39452 1.41022 1.52408 2.44312 3.20358 3.53351 3.74440 3.77555 3.94931 4.22414 4.44779 4.45312 4.54476 4.55773 4.58079 4.67589 4.72520 4.78540 5.05489 5.07051 5.14618 5.20364 5.23647 5.26781 5.37130 5.40269 5.43917 5.55611 5.69166 5.78687 5.94978 6.14548 6.39951 6.57291 6.99681 7.05973 7.53582 8.99119 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.027326 B = 0.009733 C = 0.007796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.435161 B = 2876.047344 C = 3590.692571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.226 3.774 4 H -0.039 1.039 5 C -0.497 4.497 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.923 5.923 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.281 1.281 13 N -0.673 5.673 14 C 0.097 3.903 15 H 0.007 0.993 16 C -0.102 4.102 17 C -0.079 4.079 18 H 0.110 0.890 19 C -0.164 4.164 20 C -0.176 4.176 21 C -0.079 4.079 22 H 0.105 0.895 23 C -0.102 4.102 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.033 0.967 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.258 0.742 30 H 0.327 0.673 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.086 0.914 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 8.032 -8.910 13.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.117 3.883 4 H -0.022 1.022 5 C -0.536 4.536 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.564 5.564 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.207 1.207 13 N -0.305 5.305 14 C -0.013 4.013 15 H 0.025 0.975 16 C -0.140 4.140 17 C -0.098 4.098 18 H 0.128 0.872 19 C -0.182 4.182 20 C -0.194 4.194 21 C -0.098 4.098 22 H 0.123 0.877 23 C -0.139 4.139 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.147 0.853 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.105 0.895 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.587 7.952 -8.965 12.832 hybrid contribution 0.250 -0.182 1.437 1.470 sum -4.337 7.770 -7.528 11.656 Atomic orbital electron populations 1.21749 0.96344 1.01249 1.00270 1.21608 0.94201 0.99082 1.01212 1.18975 0.94223 0.90509 0.84544 1.02153 1.21558 0.92629 1.35433 1.03999 0.92620 1.25695 1.02023 0.95724 0.95835 1.70020 1.36000 1.40375 1.10040 0.85603 0.81262 0.77606 0.77755 1.19318 1.21100 1.20702 1.60664 1.37017 1.02493 1.30301 1.22445 0.95339 0.88347 0.95176 0.97467 1.22657 0.97308 0.97203 0.96872 1.23017 0.97698 0.93768 0.95289 0.87222 1.24300 0.94690 0.98970 1.00261 1.24172 0.98802 0.94796 1.01667 1.23065 0.97514 0.94049 0.95123 0.87687 1.23963 0.94441 0.99390 0.96137 0.92408 0.92205 0.94792 0.94332 0.91535 0.93313 0.85331 0.92035 0.94342 0.84042 0.84314 0.89522 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 9.81 71.98 0.71 -4.56 16 2 C -0.12 -5.85 5.35 30.59 0.16 -5.69 16 3 C 0.23 11.52 2.03 44.17 0.09 11.61 16 4 H -0.04 -2.27 7.43 -2.39 -0.02 -2.29 16 5 C -0.50 -27.87 8.12 25.60 0.21 -27.66 16 6 H 0.06 3.16 6.15 -2.91 -0.02 3.14 16 7 C 0.00 0.26 5.29 84.66 0.45 0.70 16 8 N -0.92 -54.23 11.29 21.45 0.24 -53.99 16 9 Si 0.95 45.04 29.54 68.60 2.03 47.06 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 N -0.67 -28.40 6.03 -465.58 -2.81 -31.21 16 14 C 0.10 3.74 2.58 46.43 0.12 3.86 16 15 H 0.01 0.32 7.41 -2.39 -0.02 0.31 16 16 C -0.10 -3.88 5.49 32.33 0.18 -3.71 16 17 C -0.08 -2.27 5.26 -8.07 -0.04 -2.31 16 18 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 19 C -0.16 -4.19 10.14 25.79 0.26 -3.93 16 20 C -0.18 -4.58 10.15 25.79 0.26 -4.32 16 21 C -0.08 -2.29 4.66 -8.15 -0.04 -2.33 16 22 H 0.11 2.74 8.13 -2.39 -0.02 2.72 16 23 C -0.10 -2.77 6.67 33.73 0.23 -2.54 16 24 H 0.06 1.92 6.34 -2.39 -0.02 1.91 16 25 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 28 H 0.07 3.64 5.94 -2.39 -0.01 3.62 16 29 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.33 12.34 6.17 -89.70 -0.55 11.79 16 31 H 0.06 2.67 6.16 -2.39 -0.01 2.66 16 32 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 33 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 2.13 8.10 -2.39 -0.02 2.11 16 Total: -1.00 -61.35 278.78 2.54 -58.81 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.50 Total: 20.20 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 2.58 Total: -40.87 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -2.57 Total: -85.20 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -61.35 2.54 -58.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382142205.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.473 kcal (2) G-P(sol) polarization free energy of solvation -61.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds