Wall clock time and date at job start Mon Mar 30 2020 02:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86805 * 120.00104 * 2 1 4 4 H 1.48507 * 109.46972 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47058 * 120.00038 * 3 2 1 6 6 H 1.48493 * 109.47449 * 240.00365 * 3 2 1 7 7 C 1.38927 * 120.00043 * 180.28182 * 2 1 3 8 8 H 1.07997 * 120.00390 * 2.29346 * 7 2 1 9 9 N 1.37371 * 120.00109 * 182.29433 * 7 2 1 10 10 N 1.40091 * 126.14204 * 6.25637 * 9 7 2 11 11 C 1.31013 * 108.39255 * 179.87804 * 10 9 7 12 12 C 1.50702 * 125.73329 * 180.14057 * 11 10 9 13 13 F 1.39901 * 109.46683 * 270.27771 * 12 11 10 14 14 F 1.39898 * 109.47485 * 30.27992 * 12 11 10 15 15 F 1.39900 * 109.46906 * 150.28327 * 12 11 10 16 16 C 1.39921 * 108.52873 * 0.37881 * 11 10 9 17 17 C 1.35914 * 107.93106 * 359.75791 * 16 11 10 18 18 O 1.35680 * 126.28751 * 179.97438 * 17 16 11 19 19 H 0.96999 * 119.99832 * 174.78708 * 1 2 3 20 20 H 1.07998 * 126.03779 * 179.76016 * 16 11 10 21 21 H 0.96706 * 113.99768 * 270.02235 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 1.2824 2.7465 0.0006 5 1 3.1012 1.6964 1.2125 6 1 3.1011 1.6965 -1.2125 7 6 2.0080 -1.2031 -0.0059 8 1 1.4687 -2.1379 -0.0479 9 7 3.3809 -1.2038 0.0417 10 7 4.2020 -0.0831 0.2216 11 6 5.4505 -0.4800 0.2141 12 6 6.6571 0.4076 0.3798 13 9 7.0753 0.8651 -0.8744 14 9 6.3249 1.5003 1.1878 15 9 7.6914 -0.3188 0.9798 16 6 5.4756 -1.8655 0.0208 17 6 4.1909 -2.2967 -0.0836 18 8 3.7870 -3.5774 -0.2774 19 1 -0.4850 -0.8366 -0.0763 20 1 6.3596 -2.4833 -0.0354 21 1 3.7000 -3.8259 -1.2079 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409437075.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:02 Heat of formation + Delta-G solvation = -147.220824 kcal Electronic energy + Delta-G solvation = -15319.945580 eV Core-core repulsion = 11974.977995 eV Total energy + Delta-G solvation = -3344.967585 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -51.13519 -48.65263 -48.63655 -42.24971 -38.08387 -36.07807 -33.41268 -30.36240 -28.62529 -25.87792 -22.61824 -22.34331 -20.49527 -19.79238 -19.52567 -19.28048 -17.80924 -17.29121 -16.24099 -15.74291 -15.60707 -15.47449 -15.31855 -15.07644 -14.87019 -14.80121 -14.79634 -14.48357 -13.50379 -13.13073 -12.83710 -12.23853 -12.00618 -11.83642 -10.72435 -10.57235 -9.72159 -9.54286 -6.80498 0.61205 1.23279 1.29651 1.48201 1.58706 1.83847 1.98155 2.22048 2.64789 2.71820 3.08401 3.43302 3.61490 4.08089 4.57448 4.90861 5.14110 5.32508 5.70073 5.96599 6.37944 6.72653 7.01496 7.91145 Molecular weight = 222.04amu Principal moments of inertia in cm(-1) A = 0.029909 B = 0.013851 C = 0.010092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.947570 B = 2021.043928 C = 2773.937151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.017 3.983 3 Si 1.134 2.866 4 H -0.298 1.298 5 H -0.273 1.273 6 H -0.283 1.283 7 C -0.385 4.385 8 H 0.118 0.882 9 N -0.166 5.166 10 N -0.338 5.338 11 C -0.086 4.086 12 C 0.568 3.432 13 F -0.172 7.172 14 F -0.179 7.179 15 F -0.160 7.160 16 C -0.231 4.231 17 C 0.160 3.840 18 O -0.462 6.462 19 H 0.285 0.715 20 H 0.181 0.819 21 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.935 -1.775 -1.788 10.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.196 4.196 3 Si 0.962 3.038 4 H -0.227 1.227 5 H -0.200 1.200 6 H -0.210 1.210 7 C -0.518 4.518 8 H 0.136 0.864 9 N 0.056 4.944 10 N -0.179 5.179 11 C -0.236 4.236 12 C 0.512 3.488 13 F -0.153 7.153 14 F -0.160 7.160 15 F -0.141 7.141 16 C -0.262 4.262 17 C -0.010 4.010 18 O -0.266 6.266 19 H 0.096 0.904 20 H 0.198 0.802 21 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 8.927 0.643 -1.015 9.008 hybrid contribution 0.255 -2.557 -0.617 2.643 sum 9.182 -1.914 -1.632 9.521 Atomic orbital electron populations 1.70901 1.06500 1.32363 1.36621 1.27557 0.96035 1.05406 0.90627 0.82407 0.71588 0.70178 0.79640 1.22699 1.19983 1.20965 1.21339 0.77245 0.98410 1.54836 0.86444 1.45884 1.05958 1.03940 1.38616 1.76335 1.01020 1.08105 1.32402 1.21501 0.92308 0.95048 1.14716 1.16656 0.80995 0.77212 0.73905 1.93200 1.91004 1.89513 1.41628 1.93183 1.92578 1.56397 1.73852 1.93187 1.59856 1.77448 1.83626 1.20611 0.96322 0.92336 1.16966 1.18779 0.87934 0.81607 1.12715 1.84798 1.89206 1.19563 1.33034 0.90355 0.80151 0.73801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.55 13.69 21.65 0.30 -44.25 14 2 C 0.02 0.93 5.50 84.93 0.47 1.39 14 3 Si 1.13 54.79 25.75 68.60 1.77 56.56 14 4 H -0.30 -13.80 7.11 99.48 0.71 -13.09 14 5 H -0.27 -13.43 6.75 99.48 0.67 -12.76 14 6 H -0.28 -13.61 7.11 99.48 0.71 -12.90 14 7 C -0.39 -20.15 10.54 83.99 0.89 -19.26 14 8 H 0.12 6.09 8.05 -2.91 -0.02 6.07 14 9 N -0.17 -8.29 3.68 -301.30 -1.11 -9.40 14 10 N -0.34 -16.71 7.10 -47.27 -0.34 -17.05 14 11 C -0.09 -3.68 6.56 43.09 0.28 -3.40 14 12 C 0.57 20.63 3.55 71.24 0.25 20.88 14 13 F -0.17 -5.93 17.30 44.97 0.78 -5.15 14 14 F -0.18 -6.80 17.25 44.97 0.78 -6.02 14 15 F -0.16 -5.05 17.03 44.97 0.77 -4.28 14 16 C -0.23 -8.90 10.44 22.14 0.23 -8.67 14 17 C 0.16 6.83 7.97 83.41 0.66 7.50 14 18 O -0.46 -16.53 13.56 -89.98 -1.22 -17.75 14 19 H 0.29 14.49 8.72 -92.71 -0.81 13.68 14 20 H 0.18 5.53 8.06 -2.91 -0.02 5.51 14 21 H 0.40 10.05 9.06 -74.05 -0.67 9.38 14 Total: -1.00 -58.09 214.75 5.06 -53.03 By element: Atomic # 1 Polarization: -4.68 SS G_CDS: 0.56 Total: -4.12 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 2.78 Total: -1.56 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -1.15 Total: -70.70 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -1.22 Total: -17.75 kcal Atomic # 9 Polarization: -17.78 SS G_CDS: 2.32 Total: -15.46 kcal Atomic # 14 Polarization: 54.79 SS G_CDS: 1.77 Total: 56.56 kcal Total: -58.09 5.06 -53.03 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409437075.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.194 kcal (2) G-P(sol) polarization free energy of solvation -58.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds