Wall clock time and date at job start Mon Mar 30 2020 02:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99851 * 2 1 4 4 H 1.48501 * 109.46943 * 269.99926 * 3 2 1 5 5 H 1.48500 * 109.47417 * 29.99795 * 3 2 1 6 6 H 1.48498 * 109.47488 * 150.00091 * 3 2 1 7 7 C 1.37874 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00262 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99969 * 0.02562 * 7 2 1 10 10 S 1.80997 * 109.47305 * 179.97438 * 9 7 2 11 11 C 1.76195 * 100.00073 * 179.97438 * 10 9 7 12 12 O 1.21606 * 120.00160 * 0.02562 * 11 10 9 13 13 C 1.47836 * 119.99975 * 179.97438 * 11 10 9 14 14 C 1.39575 * 120.14006 * 180.02562 * 13 11 10 15 15 C 1.37961 * 119.84743 * 179.97438 * 14 13 11 16 16 C 1.38355 * 120.14913 * 359.97438 * 15 14 13 17 17 C 1.38356 * 120.29211 * 0.04428 * 16 15 14 18 18 C 1.37965 * 120.14354 * 359.95891 * 17 16 15 19 19 H 0.96991 * 120.00340 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.47069 * 59.99348 * 9 7 2 21 21 H 1.09000 * 109.46768 * 299.99507 * 9 7 2 22 22 H 1.07998 * 120.08057 * 359.70001 * 14 13 11 23 23 H 1.08010 * 119.92734 * 179.97438 * 15 14 13 24 24 H 1.08003 * 119.85668 * 180.02562 * 16 15 14 25 25 H 1.08001 * 119.93259 * 179.97438 * 17 16 15 26 26 H 1.08003 * 120.07139 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4274 -3.8749 0.0005 11 6 1.3074 -5.2350 0.0013 12 8 0.1079 -5.0350 0.0012 13 6 1.8258 -6.6195 0.0010 14 6 0.9413 -7.6991 0.0010 15 6 1.4317 -8.9886 0.0002 16 6 2.7970 -9.2128 -0.0013 17 6 3.6792 -8.1470 -0.0010 18 6 3.2019 -6.8526 -0.0001 19 1 -0.4850 0.8399 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6242 -2.5567 0.8903 22 1 -0.1247 -7.5256 0.0062 23 1 0.7484 -9.8251 0.0007 24 1 3.1758 -10.2242 -0.0024 25 1 4.7438 -8.3287 -0.0017 26 1 3.8917 -6.0215 -0.0002 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584650579.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:49 Heat of formation + Delta-G solvation = -21.483729 kcal Electronic energy + Delta-G solvation = -11877.844155 eV Core-core repulsion = 9626.478894 eV Total energy + Delta-G solvation = -2251.365261 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.49365 -37.73600 -33.21817 -31.40822 -30.95711 -28.60519 -24.86161 -23.25419 -22.59515 -20.93183 -17.70635 -16.56376 -16.13504 -15.50677 -14.91404 -14.40644 -14.39511 -14.16567 -13.55698 -13.29683 -12.61897 -12.42067 -12.16764 -11.69579 -11.31253 -11.04990 -10.91689 -10.66097 -9.69546 -9.46028 -9.01632 -9.00160 -8.85409 -8.68117 -7.47855 -6.22388 -4.29998 0.75337 1.35298 2.10549 2.52735 3.24117 3.29779 3.32585 3.46367 3.84175 4.31254 4.68156 4.87522 4.91685 5.08315 5.13880 5.40371 5.45991 5.80941 5.96149 6.32944 6.38939 6.41164 6.85963 7.02926 7.12623 7.58677 7.69001 7.91707 8.71537 9.33715 10.88325 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.072093 B = 0.005807 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.294373 B = 4820.865954 C = 5194.016359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.523 4.523 8 H 0.070 0.930 9 C 0.082 3.918 10 S -0.199 6.199 11 C 0.376 3.624 12 O -0.451 6.451 13 C -0.135 4.135 14 C -0.064 4.064 15 C -0.134 4.134 16 C -0.097 4.097 17 C -0.132 4.132 18 C -0.068 4.068 19 H 0.267 0.733 20 H 0.049 0.951 21 H 0.050 0.950 22 H 0.133 0.867 23 H 0.127 0.873 24 H 0.124 0.876 25 H 0.128 0.872 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.743 -15.297 0.003 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.563 4.563 8 H 0.088 0.912 9 C -0.065 4.065 10 S 0.038 5.962 11 C 0.146 3.854 12 O -0.333 6.333 13 C -0.142 4.142 14 C -0.084 4.084 15 C -0.152 4.152 16 C -0.116 4.116 17 C -0.150 4.150 18 C -0.087 4.087 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.150 0.850 23 H 0.145 0.855 24 H 0.142 0.858 25 H 0.146 0.854 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.133 -14.953 0.008 16.162 hybrid contribution -0.924 0.806 -0.009 1.226 sum 5.210 -14.148 -0.002 15.076 Atomic orbital electron populations 1.69974 1.06179 1.27537 1.48625 1.24985 0.94994 0.99342 0.94410 0.86311 0.79681 0.82014 0.78407 1.20249 1.20879 1.19473 1.20664 0.93428 0.88527 1.53658 0.91228 1.21292 0.93410 0.89844 1.01942 1.86086 1.21103 1.03102 1.85952 1.24929 0.92527 0.91869 0.76086 1.90682 1.16969 1.84830 1.40838 1.20481 0.94558 0.93682 1.05518 1.21375 1.00304 0.91614 0.95113 1.21111 0.95663 0.96570 1.01905 1.21352 0.93471 0.99118 0.97661 1.21135 1.00048 0.92276 1.01582 1.21526 0.94411 0.97767 0.94987 0.92297 0.93227 0.93211 0.84956 0.85542 0.85784 0.85384 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 15 2 C 0.07 1.90 5.46 -17.82 -0.10 1.81 15 3 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 15 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.52 -14.74 9.13 -34.44 -0.31 -15.05 15 8 H 0.07 1.90 7.71 -52.49 -0.40 1.50 15 9 C 0.08 2.20 4.71 36.01 0.17 2.37 15 10 S -0.20 -4.33 20.47 -107.50 -2.20 -6.53 15 11 C 0.38 7.67 7.39 34.66 0.26 7.93 15 12 O -0.45 -10.49 16.09 5.27 0.08 -10.41 15 13 C -0.13 -2.21 5.87 -104.98 -0.62 -2.83 15 14 C -0.06 -0.91 9.60 -39.18 -0.38 -1.28 15 15 C -0.13 -1.49 10.03 -39.64 -0.40 -1.88 15 16 C -0.10 -0.98 10.04 -39.49 -0.40 -1.37 15 17 C -0.13 -1.45 10.03 -39.64 -0.40 -1.85 15 18 C -0.07 -0.94 9.46 -39.19 -0.37 -1.32 15 19 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 20 H 0.05 1.43 8.14 -51.91 -0.42 1.01 15 21 H 0.05 1.43 8.14 -51.92 -0.42 1.01 15 22 H 0.13 1.88 7.65 -52.49 -0.40 1.48 15 23 H 0.13 1.05 8.06 -52.48 -0.42 0.63 15 24 H 0.12 0.87 8.06 -52.48 -0.42 0.45 15 25 H 0.13 1.05 8.06 -52.49 -0.42 0.63 15 26 H 0.14 1.89 6.85 -52.48 -0.36 1.53 15 LS Contribution 253.39 15.07 3.82 3.82 Total: -1.00 -30.87 253.39 -7.54 -38.40 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -2.41 Total: -2.55 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -2.54 Total: -13.47 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.74 Total: -25.46 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -2.20 Total: -6.53 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.87 -7.54 -38.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584650579.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.918 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds