Wall clock time and date at job start Mon Mar 30 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86794 * 120.00460 * 2 1 4 4 H 1.48505 * 109.47346 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47320 * 299.99495 * 3 2 1 6 6 H 1.48505 * 109.47078 * 59.99565 * 3 2 1 7 7 C 1.40214 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.40287 * 119.99871 * 0.02562 * 7 2 1 10 10 N 1.32984 * 126.20627 * 0.30224 * 9 7 2 11 11 C 1.32974 * 109.75226 * 180.11615 * 10 9 7 12 12 C 1.48311 * 125.29616 * 179.88387 * 11 10 9 13 13 C 1.38868 * 122.86566 * 359.89185 * 12 11 10 14 14 N 1.29789 * 116.83419 * 180.35687 * 13 12 11 15 15 S 1.69532 * 107.50809 * 359.71866 * 14 13 12 16 16 C 1.36360 * 122.86702 * 179.71645 * 12 11 10 17 17 N 1.32295 * 109.41423 * 359.61894 * 11 10 9 18 18 N 1.37117 * 126.20066 * 179.97438 * 9 7 2 19 19 H 0.96996 * 126.93238 * 0.05706 * 18 9 7 20 20 H 0.97007 * 119.99145 * 0.02562 * 1 2 3 21 21 H 1.07998 * 121.58341 * 0.07173 * 13 12 11 22 22 H 1.08002 * 127.26084 * 359.97174 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.7009 1.3462 0.0006 5 1 1.8823 2.3963 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0077 -1.2143 0.0005 8 1 3.0877 -1.2144 0.0010 9 6 1.3062 -2.4292 0.0005 10 7 -0.0158 -2.5729 -0.0056 11 6 -0.3274 -3.8656 -0.0009 12 6 -1.7050 -4.4150 -0.0029 13 6 -2.8371 -3.6108 -0.0079 14 7 -3.9854 -4.2156 -0.0019 15 16 -3.6833 -5.8838 0.0027 16 6 -1.9680 -5.7530 -0.0035 17 7 0.7825 -4.5854 0.0001 18 7 1.8594 -3.6838 0.0005 19 1 2.8040 -3.9043 0.0013 20 1 -0.4849 0.8402 -0.0004 21 1 -2.7654 -2.5332 -0.0117 22 1 -1.2507 -6.5604 -0.0031 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606262967.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:09 Heat of formation + Delta-G solvation = 92.316202 kcal Electronic energy + Delta-G solvation = -12177.860107 eV Core-core repulsion = 9860.181989 eV Total energy + Delta-G solvation = -2317.678118 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.027 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.70869 -39.56699 -35.56221 -33.43098 -31.92211 -31.01003 -27.74458 -26.32572 -22.86607 -22.45469 -20.33632 -19.12817 -18.79991 -17.49822 -16.64886 -16.31587 -15.75546 -14.95037 -14.82717 -14.40230 -14.17840 -13.54394 -12.92006 -12.77623 -12.41904 -12.14008 -11.80589 -11.59129 -11.48505 -11.08021 -10.33713 -9.94595 -9.92923 -9.23668 -8.50910 -6.73929 -0.38534 0.51233 0.85189 0.92082 1.39169 1.47895 1.64124 1.86177 2.22226 2.58990 2.76503 3.47837 3.73370 3.80927 4.11355 4.54724 4.85222 4.94178 5.21295 5.51803 5.70492 6.02163 6.28461 6.34041 6.76670 7.23814 8.13357 8.44329 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.050730 B = 0.007538 C = 0.006578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.804669 B = 3713.774030 C = 4255.732088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.036 3.964 3 Si 1.002 2.998 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.470 4.470 8 H 0.105 0.895 9 C 0.381 3.619 10 N -0.583 5.583 11 C 0.256 3.744 12 C -0.096 4.096 13 C 0.128 3.872 14 N -0.490 5.490 15 S 0.314 5.686 16 C -0.170 4.170 17 N -0.406 5.406 18 N -0.557 5.557 19 H 0.430 0.570 20 H 0.286 0.714 21 H 0.181 0.819 22 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.743 -4.337 0.005 4.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.188 4.188 3 Si 0.822 3.178 4 H -0.173 1.173 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.511 4.511 8 H 0.123 0.877 9 C 0.133 3.867 10 N -0.319 5.319 11 C -0.027 4.027 12 C -0.115 4.115 13 C -0.071 4.071 14 N -0.309 5.309 15 S 0.465 5.535 16 C -0.321 4.321 17 N -0.243 5.243 18 N -0.278 5.278 19 H 0.274 0.726 20 H 0.096 0.904 21 H 0.198 0.802 22 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.335 -5.472 0.008 6.981 hybrid contribution 2.939 1.464 -0.003 3.284 sum -1.396 -4.008 0.005 4.244 Atomic orbital electron populations 1.70080 1.09055 1.30013 1.29616 1.26896 0.95731 1.04394 0.91786 0.84853 0.79256 0.75057 0.78635 1.17293 1.19290 1.19296 1.18943 0.95047 0.87640 1.49505 0.87702 1.21369 0.87972 0.86772 0.90634 1.71422 1.12064 1.14571 1.33888 1.21858 0.91971 0.89922 0.98985 1.18044 0.90525 0.92365 1.10599 1.22694 0.86396 1.02970 0.95027 1.76533 1.25516 1.03087 1.25774 1.83371 0.95612 1.08047 1.66426 1.26935 1.04153 0.99315 1.01740 1.77733 0.93915 1.15611 1.37030 1.47918 1.07777 1.04036 1.68110 0.72582 0.90375 0.80213 0.78059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -39.59 11.92 21.87 0.26 -39.33 14 2 C 0.04 1.72 5.50 85.35 0.47 2.19 14 3 Si 1.00 35.51 29.56 68.60 2.03 37.54 14 4 H -0.25 -8.30 7.11 99.48 0.71 -7.60 14 5 H -0.27 -9.25 7.11 99.48 0.71 -8.55 14 6 H -0.27 -9.26 7.11 99.48 0.71 -8.55 14 7 C -0.47 -23.72 9.47 23.25 0.22 -23.50 14 8 H 0.11 4.73 7.85 -2.91 -0.02 4.70 14 9 C 0.38 20.58 7.69 133.80 1.03 21.61 14 10 N -0.58 -32.63 9.26 -187.22 -1.73 -34.37 14 11 C 0.26 12.98 7.82 137.51 1.08 14.06 14 12 C -0.10 -4.00 5.83 -20.88 -0.12 -4.13 14 13 C 0.13 5.14 11.00 85.15 0.94 6.07 14 14 N -0.49 -17.44 12.05 -61.57 -0.74 -18.18 14 15 S 0.31 8.73 23.70 -56.49 -1.34 7.39 14 16 C -0.17 -5.58 11.13 67.38 0.75 -4.83 14 17 N -0.41 -20.10 12.68 -52.57 -0.67 -20.76 14 18 N -0.56 -26.90 7.58 -55.55 -0.42 -27.32 14 19 H 0.43 17.35 8.96 -213.10 -1.91 15.44 14 20 H 0.29 13.28 8.29 -92.70 -0.77 12.51 14 21 H 0.18 7.73 8.06 -2.91 -0.02 7.70 14 22 H 0.20 5.79 8.06 -2.91 -0.02 5.77 14 Total: -1.00 -63.23 227.74 1.12 -62.11 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -0.63 Total: 21.44 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 4.36 Total: 11.47 kcal Atomic # 7 Polarization: -136.66 SS G_CDS: -3.30 Total: -139.96 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Atomic # 16 Polarization: 8.73 SS G_CDS: -1.34 Total: 7.39 kcal Total: -63.23 1.12 -62.11 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606262967.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.431 kcal (2) G-P(sol) polarization free energy of solvation -63.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds