Wall clock time and date at job start Mon Mar 30 2020 03:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86806 * 120.00367 * 2 1 4 4 H 1.48504 * 109.46840 * 269.99930 * 3 2 1 5 5 H 1.48494 * 109.46782 * 29.99655 * 3 2 1 6 6 H 1.48492 * 109.47020 * 149.99964 * 3 2 1 7 7 C 1.40315 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99761 * 359.97438 * 7 2 1 9 9 C 1.40068 * 120.00257 * 179.97438 * 7 2 1 10 10 C 1.35024 * 119.99959 * 179.97438 * 9 7 2 11 11 C 1.50706 * 119.99788 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46931 * 125.00259 * 11 10 9 13 13 C 1.38244 * 119.98773 * 89.99891 * 12 11 10 14 14 C 1.38217 * 120.01084 * 180.02562 * 13 12 11 15 15 C 1.38351 * 119.98541 * 0.25893 * 14 13 12 16 16 Cl 1.73604 * 120.00786 * 179.69323 * 15 14 13 17 17 C 1.38349 * 119.97465 * 359.42086 * 15 14 13 18 18 C 1.38212 * 119.98525 * 0.59771 * 17 15 14 19 19 H 0.97005 * 119.99289 * 0.02562 * 1 2 3 20 20 H 1.08003 * 120.00121 * 0.02562 * 9 7 2 21 21 H 1.07995 * 120.00441 * 0.02562 * 10 9 7 22 22 H 1.08992 * 109.47390 * 5.00166 * 11 10 9 23 23 H 1.09001 * 109.47327 * 244.99733 * 11 10 9 24 24 H 1.07999 * 119.99331 * 0.02562 * 13 12 11 25 25 H 1.08002 * 120.00169 * 179.97438 * 14 13 12 26 26 H 1.08008 * 120.00633 * 180.29755 * 17 15 14 27 27 H 1.08000 * 119.99226 * 179.67843 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4385 2.6526 0.7000 6 1 3.5385 1.4401 0.7000 7 6 2.0085 -1.2152 0.0005 8 1 1.4684 -2.1505 0.0014 9 6 3.4091 -1.2152 0.0000 10 6 4.0842 -2.3846 0.0010 11 6 5.5912 -2.3846 0.0010 12 6 6.0935 -3.1986 1.1657 13 6 6.3238 -4.5533 1.0137 14 6 6.7840 -5.3004 2.0816 15 6 7.0090 -4.6933 3.3043 16 17 7.5794 -5.6327 4.6482 17 6 6.7847 -3.3363 3.4539 18 6 6.3242 -2.5903 2.3854 19 1 -0.4849 0.8401 -0.0004 20 1 3.9492 -0.2799 -0.0004 21 1 3.5442 -3.3199 0.0019 22 1 5.9546 -1.3609 0.0897 23 1 5.9546 -2.8198 -0.9299 24 1 6.1441 -5.0278 0.0603 25 1 6.9634 -6.3587 1.9628 26 1 6.9648 -2.8610 4.4069 27 1 6.1441 -1.5320 2.5035 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687681269.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:48 Heat of formation + Delta-G solvation = 4.239397 kcal Electronic energy + Delta-G solvation = -11853.298888 eV Core-core repulsion = 9601.005359 eV Total energy + Delta-G solvation = -2252.293529 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.04258 -36.37079 -34.48210 -32.96479 -30.77586 -30.63678 -27.13058 -23.56655 -22.52111 -20.89145 -18.36519 -17.54926 -16.74908 -15.24934 -14.96894 -14.62312 -13.51988 -13.26947 -13.24341 -13.07092 -12.68863 -12.15998 -11.47155 -11.37185 -11.34441 -11.09698 -10.67432 -10.55285 -10.10845 -10.09337 -9.59480 -9.39237 -8.76240 -8.15662 -7.87828 -6.84303 -4.30353 1.49781 1.58196 2.30965 2.93261 3.07079 3.10962 3.64877 3.92632 3.99660 5.04296 5.11392 5.27316 5.49313 5.64657 5.68902 5.99905 6.08308 6.31545 6.47155 6.49625 6.61098 6.71491 6.90766 7.05452 7.14570 7.33655 7.90671 8.37508 8.46389 8.88649 9.09625 10.21159 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.047511 B = 0.005251 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.194020 B = 5330.809079 C = 5416.641271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.447 4.447 8 H 0.081 0.919 9 C 0.017 3.983 10 C -0.406 4.406 11 C -0.011 4.011 12 C -0.039 4.039 13 C -0.114 4.114 14 C -0.110 4.110 15 C -0.055 4.055 16 Cl -0.091 7.091 17 C -0.109 4.109 18 C -0.108 4.108 19 H 0.282 0.718 20 H 0.065 0.935 21 H 0.081 0.919 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.128 0.872 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.360 -4.257 4.582 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.477 4.477 8 H 0.099 0.901 9 C -0.004 4.004 10 C -0.428 4.428 11 C -0.048 4.048 12 C -0.039 4.039 13 C -0.133 4.133 14 C -0.129 4.129 15 C -0.081 4.081 16 Cl -0.062 7.062 17 C -0.128 4.128 18 C -0.126 4.126 19 H 0.093 0.907 20 H 0.083 0.917 21 H 0.099 0.901 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.145 0.855 25 H 0.143 0.857 26 H 0.144 0.856 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.122 -4.210 4.703 13.667 hybrid contribution 0.139 0.601 0.228 0.657 sum 12.261 -3.609 4.931 13.700 Atomic orbital electron populations 1.69587 1.07949 1.29750 1.37579 1.26344 0.94926 1.01555 0.91362 0.86348 0.80702 0.80401 0.79687 1.19032 1.20488 1.17780 1.19540 0.91260 0.94390 1.42462 0.90101 1.20035 0.94066 0.94537 0.91723 1.21682 0.90348 0.96706 1.34084 1.19194 0.96354 0.96749 0.92527 1.20531 0.92551 0.94318 0.96545 1.21019 0.99873 0.93794 0.98583 1.20957 1.00447 1.00018 0.91461 1.20768 1.05969 0.92314 0.89086 1.98329 1.88019 1.73336 1.46514 1.20978 1.00290 0.91905 0.99608 1.21035 0.99141 1.00351 0.92118 0.90721 0.91682 0.90118 0.92803 0.93475 0.85452 0.85662 0.85603 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.39 13.92 55.57 0.77 -21.62 15 2 C 0.07 1.97 5.52 -17.26 -0.10 1.88 15 3 Si 0.90 19.53 27.47 -169.99 -4.67 14.86 15 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 6 H -0.25 -5.34 6.36 56.52 0.36 -4.98 15 7 C -0.45 -12.40 9.64 -38.12 -0.37 -12.76 15 8 H 0.08 2.44 8.06 -52.49 -0.42 2.01 15 9 C 0.02 0.42 8.50 -40.04 -0.34 0.08 15 10 C -0.41 -9.51 9.26 -35.45 -0.33 -9.84 15 11 C -0.01 -0.21 5.80 -29.03 -0.17 -0.38 15 12 C -0.04 -0.68 5.12 -104.62 -0.54 -1.22 15 13 C -0.11 -1.79 9.70 -39.59 -0.38 -2.18 15 14 C -0.11 -1.59 9.83 -39.55 -0.39 -1.98 15 15 C -0.06 -0.81 6.32 -39.50 -0.25 -1.05 15 16 Cl -0.09 -1.17 28.96 -51.86 -1.50 -2.67 15 17 C -0.11 -1.62 9.83 -39.55 -0.39 -2.01 15 18 C -0.11 -1.77 9.70 -39.59 -0.38 -2.15 15 19 H 0.28 6.92 8.29 -40.82 -0.34 6.58 15 20 H 0.07 1.54 5.12 -52.48 -0.27 1.27 15 21 H 0.08 2.01 8.05 -52.49 -0.42 1.59 15 22 H 0.05 0.98 7.79 -51.93 -0.40 0.58 15 23 H 0.05 0.83 8.09 -51.93 -0.42 0.41 15 24 H 0.13 1.80 8.06 -52.49 -0.42 1.38 15 25 H 0.13 1.52 8.06 -52.49 -0.42 1.10 15 26 H 0.13 1.60 8.06 -52.48 -0.42 1.18 15 27 H 0.13 1.98 8.06 -52.49 -0.42 1.56 15 LS Contribution 257.77 15.07 3.88 3.88 Total: -1.00 -27.13 257.77 -7.95 -35.08 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -2.81 Total: 2.07 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: -3.63 Total: -31.60 kcal Atomic # 7 Polarization: -22.39 SS G_CDS: 0.77 Total: -21.62 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.67 Total: 14.86 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.50 Total: -2.67 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.13 -7.95 -35.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687681269.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.320 kcal (2) G-P(sol) polarization free energy of solvation -27.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds