Wall clock time and date at job start Mon Mar 30 2020 03:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86806 * 120.00367 * 2 1 4 4 H 1.48504 * 109.46840 * 269.99930 * 3 2 1 5 5 H 1.48494 * 109.46782 * 29.99655 * 3 2 1 6 6 H 1.48492 * 109.47020 * 149.99964 * 3 2 1 7 7 C 1.40315 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99761 * 359.97438 * 7 2 1 9 9 C 1.40068 * 120.00257 * 179.97438 * 7 2 1 10 10 C 1.35024 * 119.99959 * 179.97438 * 9 7 2 11 11 C 1.50706 * 119.99788 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46931 * 125.00259 * 11 10 9 13 13 C 1.38244 * 119.98773 * 89.99891 * 12 11 10 14 14 C 1.38217 * 120.01084 * 180.02562 * 13 12 11 15 15 C 1.38351 * 119.98541 * 0.25893 * 14 13 12 16 16 Cl 1.73604 * 120.00786 * 179.69323 * 15 14 13 17 17 C 1.38349 * 119.97465 * 359.42086 * 15 14 13 18 18 C 1.38212 * 119.98525 * 0.59771 * 17 15 14 19 19 H 0.97005 * 119.99289 * 0.02562 * 1 2 3 20 20 H 1.08003 * 120.00121 * 0.02562 * 9 7 2 21 21 H 1.07995 * 120.00441 * 0.02562 * 10 9 7 22 22 H 1.08992 * 109.47390 * 5.00166 * 11 10 9 23 23 H 1.09001 * 109.47327 * 244.99733 * 11 10 9 24 24 H 1.07999 * 119.99331 * 0.02562 * 13 12 11 25 25 H 1.08002 * 120.00169 * 179.97438 * 14 13 12 26 26 H 1.08008 * 120.00633 * 180.29755 * 17 15 14 27 27 H 1.08000 * 119.99226 * 179.67843 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4385 2.6526 0.7000 6 1 3.5385 1.4401 0.7000 7 6 2.0085 -1.2152 0.0005 8 1 1.4684 -2.1505 0.0014 9 6 3.4091 -1.2152 0.0000 10 6 4.0842 -2.3846 0.0010 11 6 5.5912 -2.3846 0.0010 12 6 6.0935 -3.1986 1.1657 13 6 6.3238 -4.5533 1.0137 14 6 6.7840 -5.3004 2.0816 15 6 7.0090 -4.6933 3.3043 16 17 7.5794 -5.6327 4.6482 17 6 6.7847 -3.3363 3.4539 18 6 6.3242 -2.5903 2.3854 19 1 -0.4849 0.8401 -0.0004 20 1 3.9492 -0.2799 -0.0004 21 1 3.5442 -3.3199 0.0019 22 1 5.9546 -1.3609 0.0897 23 1 5.9546 -2.8198 -0.9299 24 1 6.1441 -5.0278 0.0603 25 1 6.9634 -6.3587 1.9628 26 1 6.9648 -2.8610 4.4069 27 1 6.1441 -1.5320 2.5035 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687681269.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:48 Heat of formation + Delta-G solvation = -8.987272 kcal Electronic energy + Delta-G solvation = -11853.872439 eV Core-core repulsion = 9601.005359 eV Total energy + Delta-G solvation = -2252.867080 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.25109 -37.49600 -36.33976 -34.68926 -32.29536 -31.93849 -28.74857 -25.29550 -23.70330 -22.24449 -20.24880 -19.53288 -17.93475 -16.77143 -16.31107 -16.06710 -15.16905 -14.69066 -14.51992 -14.39619 -14.19932 -13.78684 -13.13395 -12.83232 -12.73140 -12.33630 -12.07266 -12.01323 -11.78547 -11.65944 -11.46333 -11.27416 -9.93846 -9.87338 -9.37970 -8.80513 -6.37083 0.27189 0.40451 1.18555 1.22167 1.31789 1.47259 1.81474 2.14554 2.75768 3.29398 3.89530 4.01464 4.15731 4.40714 4.49329 4.56346 4.78838 4.86035 5.05117 5.09971 5.14459 5.30347 5.35841 5.45234 5.75037 5.85771 5.95778 6.30153 6.41316 6.87105 7.10297 8.30241 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.047511 B = 0.005251 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.194020 B = 5330.809079 C = 5416.641271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.026 3.974 3 Si 0.976 3.024 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.241 1.241 7 C -0.488 4.488 8 H 0.030 0.970 9 C 0.000 4.000 10 C -0.383 4.383 11 C -0.009 4.009 12 C -0.065 4.065 13 C -0.120 4.120 14 C -0.110 4.110 15 C -0.059 4.059 16 Cl -0.074 7.074 17 C -0.111 4.111 18 C -0.119 4.119 19 H 0.292 0.708 20 H 0.089 0.911 21 H 0.055 0.945 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.139 0.861 25 H 0.149 0.851 26 H 0.146 0.854 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.752 -3.640 5.211 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.186 4.186 3 Si 0.795 3.205 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.164 1.164 7 C -0.518 4.518 8 H 0.048 0.952 9 C -0.020 4.020 10 C -0.405 4.405 11 C -0.046 4.046 12 C -0.065 4.065 13 C -0.138 4.138 14 C -0.129 4.129 15 C -0.085 4.085 16 Cl -0.045 7.045 17 C -0.130 4.130 18 C -0.137 4.137 19 H 0.102 0.898 20 H 0.107 0.893 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.157 0.843 25 H 0.166 0.834 26 H 0.164 0.836 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 14.521 -3.621 5.332 15.887 hybrid contribution -0.528 0.165 0.090 0.560 sum 13.993 -3.456 5.422 15.400 Atomic orbital electron populations 1.69656 1.09631 1.31390 1.38991 1.27300 0.95801 1.05228 0.90251 0.85287 0.79610 0.75084 0.80567 1.17620 1.19058 1.16436 1.19564 0.92689 0.93419 1.46139 0.95170 1.20120 0.92967 0.96045 0.92857 1.22005 0.93263 0.95149 1.30043 1.19144 0.92799 0.98256 0.94360 1.20425 0.94754 0.94987 0.96308 1.21212 0.99591 0.93352 0.99641 1.21216 0.99553 1.01129 0.90985 1.20974 1.05188 0.92599 0.89744 1.98339 1.87718 1.72840 1.45595 1.21201 0.99617 0.92102 1.00064 1.21188 0.99369 1.00915 0.92228 0.89766 0.89323 0.92682 0.91623 0.91710 0.84327 0.83361 0.83595 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.86 13.92 21.89 0.30 -48.56 15 2 C 0.03 1.40 5.52 85.37 0.47 1.87 15 3 Si 0.98 39.42 27.47 68.60 1.88 41.30 15 4 H -0.25 -9.61 7.11 99.48 0.71 -8.91 15 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15 6 H -0.24 -9.14 6.36 99.48 0.63 -8.51 15 7 C -0.49 -28.23 9.64 23.22 0.22 -28.01 15 8 H 0.03 1.96 8.06 -2.91 -0.02 1.93 15 9 C 0.00 0.00 8.50 21.97 0.19 0.19 15 10 C -0.38 -17.92 9.26 24.95 0.23 -17.69 15 11 C -0.01 -0.31 5.80 29.11 0.17 -0.14 15 12 C -0.06 -2.13 5.12 -19.86 -0.10 -2.23 15 13 C -0.12 -3.52 9.70 22.27 0.22 -3.30 15 14 C -0.11 -2.90 9.83 22.29 0.22 -2.68 15 15 C -0.06 -1.56 6.32 22.32 0.14 -1.42 15 16 Cl -0.07 -1.71 28.96 -2.72 -0.08 -1.79 15 17 C -0.11 -3.03 9.83 22.29 0.22 -2.81 15 18 C -0.12 -3.65 9.70 22.26 0.22 -3.43 15 19 H 0.29 14.61 8.29 -92.70 -0.77 13.84 15 20 H 0.09 4.02 5.12 -2.91 -0.01 4.01 15 21 H 0.05 2.83 8.05 -2.91 -0.02 2.80 15 22 H 0.07 2.22 7.79 -2.39 -0.02 2.20 15 23 H 0.06 2.13 8.09 -2.39 -0.02 2.11 15 24 H 0.14 3.65 8.06 -2.91 -0.02 3.63 15 25 H 0.15 3.15 8.06 -2.91 -0.02 3.12 15 26 H 0.15 3.30 8.06 -2.91 -0.02 3.28 15 27 H 0.13 3.86 8.06 -2.91 -0.02 3.84 15 Total: -1.00 -60.13 257.77 5.39 -54.75 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.08 Total: 13.96 kcal Atomic # 6 Polarization: -61.86 SS G_CDS: 2.19 Total: -59.67 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.30 Total: -48.56 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.88 Total: 41.30 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -60.13 5.39 -54.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687681269.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.759 kcal (2) G-P(sol) polarization free energy of solvation -60.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds