Wall clock time and date at job start Mon Mar 30 2020 02:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47077 * 2 1 4 4 N 1.46896 * 109.47380 * 119.99799 * 2 1 3 5 5 C 1.46909 * 111.00141 * 275.00501 * 4 2 1 6 6 C 1.50696 * 109.47253 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99790 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99989 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99950 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99950 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46917 * 90.00479 * 10 8 6 12 12 H 1.48503 * 109.47259 * 330.00450 * 10 8 6 13 13 H 1.48501 * 109.47302 * 210.00201 * 10 8 6 14 14 C 1.52996 * 109.47416 * 240.00190 * 2 1 3 15 15 H 1.09001 * 110.51695 * 300.72924 * 14 2 1 16 16 C 1.54834 * 110.58600 * 63.51490 * 14 2 1 17 17 C 1.56197 * 103.68510 * 118.55019 * 16 14 2 18 18 H 1.09004 * 116.28666 * 164.01659 * 17 16 14 19 19 C 1.53362 * 104.07508 * 293.35606 * 17 16 14 20 20 C 1.31794 * 108.42419 * 70.08850 * 19 17 16 21 21 C 1.53355 * 108.42540 * 359.97438 * 20 19 17 22 22 H 1.09007 * 116.33240 * 160.59700 * 21 20 19 23 23 C 1.57259 * 99.80118 * 33.34225 * 21 20 19 24 24 H 1.09000 * 109.47372 * 294.67386 * 1 2 3 25 25 H 1.09005 * 109.47383 * 54.67749 * 1 2 3 26 26 H 1.08999 * 109.47179 * 174.67489 * 1 2 3 27 27 H 1.00894 * 111.00682 * 151.04727 * 4 2 1 28 28 H 1.09004 * 109.47022 * 59.99777 * 5 4 2 29 29 H 1.08997 * 109.46594 * 299.99674 * 5 4 2 30 30 H 0.96994 * 119.99862 * 179.97438 * 9 8 6 31 31 H 1.09001 * 110.58192 * 237.10281 * 16 14 2 32 32 H 1.09001 * 110.57865 * 359.85237 * 16 14 2 33 33 H 1.07997 * 125.78681 * 250.08128 * 19 17 16 34 34 H 1.07995 * 125.78511 * 179.97438 * 20 19 17 35 35 H 1.09003 * 112.52551 * 194.50217 * 23 21 20 36 36 H 1.08991 * 112.52637 * 66.62942 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0824 0.2227 2.3469 6 6 2.5873 -0.5216 3.5561 7 1 2.8363 -1.5698 3.4798 8 6 2.7304 0.1352 4.7598 9 7 3.1715 -0.5143 5.8149 10 14 2.2991 1.9479 4.8918 11 1 0.8694 2.0904 5.2675 12 1 2.5354 2.6095 3.5834 13 1 3.1494 2.5848 5.9293 14 6 2.0400 -0.7212 -1.2492 15 1 1.6756 -1.7482 -1.2730 16 6 1.6121 0.0380 -2.5290 17 6 2.9685 0.4342 -3.1946 18 1 2.9219 0.7413 -4.2395 19 6 3.5838 1.4420 -2.2160 20 6 3.9481 0.7957 -1.1267 21 6 3.6002 -0.6873 -1.3038 22 1 4.1214 -1.3876 -0.6509 23 6 3.8328 -0.8339 -2.8522 24 1 -0.3634 0.4290 0.9338 25 1 -0.3634 0.5942 -0.8385 26 1 -0.3633 -1.0232 -0.0954 27 1 2.9173 -1.1204 1.0288 28 1 1.0869 0.6164 2.5526 29 1 2.7587 1.0463 2.1182 30 1 3.2725 -0.0521 6.6617 31 1 1.0381 -0.6140 -3.1874 32 1 1.0346 0.9262 -2.2725 33 1 3.6992 2.5016 -2.3901 34 1 4.4129 1.2359 -0.2570 35 1 3.4043 -1.7522 -3.2537 36 1 4.8796 -0.7128 -3.1304 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687768308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:08 Heat of formation + Delta-G solvation = 27.369149 kcal Electronic energy + Delta-G solvation = -15472.163709 eV Core-core repulsion = 13149.548847 eV Total energy + Delta-G solvation = -2322.614861 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.82053 -35.90904 -32.77126 -31.10259 -29.42663 -28.59890 -26.96016 -26.39593 -22.31217 -20.74699 -20.28851 -19.83747 -17.53721 -16.77729 -16.53205 -15.41178 -14.92474 -14.31294 -13.56492 -13.23279 -12.75002 -12.54378 -12.44344 -12.14913 -11.85050 -11.70729 -11.30689 -11.25763 -11.02277 -10.93967 -10.91263 -10.52138 -10.40847 -10.12350 -9.91702 -9.67378 -9.22091 -8.76304 -8.56230 -7.36026 -6.03808 -4.01001 2.38474 3.29665 3.36647 3.39573 4.43745 4.55260 4.55858 4.68336 5.03331 5.10793 5.29042 5.32430 5.38981 5.42930 5.45780 5.67269 5.74229 5.83365 5.90283 5.99224 6.04006 6.08186 6.14430 6.22906 6.27779 6.46900 6.51682 6.61342 6.74593 6.87416 7.07143 7.08755 7.67260 7.98615 8.44253 8.70000 9.04846 9.58915 11.09640 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.039230 B = 0.007319 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.576169 B = 3824.695410 C = 3903.790222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.088 3.912 3 H 0.038 0.962 4 N -0.676 5.676 5 C 0.166 3.834 6 C -0.513 4.513 7 H 0.078 0.922 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.876 3.124 11 H -0.276 1.276 12 H -0.268 1.268 13 H -0.286 1.286 14 C -0.086 4.086 15 H 0.081 0.919 16 C -0.114 4.114 17 C -0.078 4.078 18 H 0.095 0.905 19 C -0.184 4.184 20 C -0.149 4.149 21 C -0.078 4.078 22 H 0.103 0.897 23 C -0.118 4.118 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.335 0.665 28 H 0.020 0.980 29 H -0.018 1.018 30 H 0.263 0.737 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.826 2.606 -18.026 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 H 0.056 0.944 4 N -0.307 5.307 5 C 0.038 3.962 6 C -0.552 4.552 7 H 0.096 0.904 8 C -0.133 4.133 9 N -0.541 5.541 10 Si 0.703 3.297 11 H -0.202 1.202 12 H -0.193 1.193 13 H -0.212 1.212 14 C -0.105 4.105 15 H 0.099 0.901 16 C -0.152 4.152 17 C -0.096 4.096 18 H 0.113 0.887 19 C -0.202 4.202 20 C -0.167 4.167 21 C -0.097 4.097 22 H 0.121 0.879 23 C -0.155 4.155 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.153 0.847 28 H 0.038 0.962 29 H -0.001 1.001 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.091 0.909 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.422 2.383 -17.642 17.859 hybrid contribution 0.517 1.677 0.204 1.767 sum -0.906 4.060 -17.438 17.927 Atomic orbital electron populations 1.21801 0.95654 1.01461 1.00653 1.21553 0.95181 0.95798 0.89715 0.94393 1.60523 1.33003 1.33902 1.03290 1.19994 0.95341 0.91249 0.89591 1.21089 1.43125 0.98621 0.92343 0.90351 1.24902 0.94867 0.97888 0.95686 1.69901 1.46861 1.36462 1.00835 0.86845 0.78717 0.86098 0.77997 1.20188 1.19302 1.21241 1.22501 0.93773 0.99911 0.94296 0.90078 1.22766 0.96129 1.00028 0.96260 1.22881 0.95234 0.94151 0.97330 0.88730 1.23947 1.00923 0.98538 0.96742 1.24104 0.98600 0.96092 0.97854 1.23009 0.95906 0.94627 0.96113 0.87915 1.24009 0.99404 0.97321 0.94781 0.92689 0.93651 0.92538 0.84713 0.96214 1.00088 0.92712 0.91651 0.91350 0.86170 0.85855 0.90877 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.15 37.16 0.34 -1.89 16 2 C 0.09 1.51 1.73 -67.72 -0.12 1.39 16 3 H 0.04 0.70 6.38 -51.93 -0.33 0.37 16 4 N -0.68 -14.20 6.30 -107.99 -0.68 -14.88 16 5 C 0.17 4.13 4.31 -4.97 -0.02 4.11 16 6 C -0.51 -14.94 9.87 -34.44 -0.34 -15.28 16 7 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 10 Si 0.88 22.02 27.47 -169.99 -4.67 17.36 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 C -0.09 -1.20 2.40 -87.97 -0.21 -1.41 16 15 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.11 -1.35 5.45 -24.05 -0.13 -1.48 16 17 C -0.08 -0.86 5.26 -86.42 -0.45 -1.32 16 18 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 19 C -0.18 -2.31 10.14 -34.86 -0.35 -2.66 16 20 C -0.15 -2.11 8.28 -34.86 -0.29 -2.40 16 21 C -0.08 -1.06 4.12 -86.43 -0.36 -1.41 16 22 H 0.10 1.42 7.52 -51.92 -0.39 1.03 16 23 C -0.12 -1.31 6.67 -22.12 -0.15 -1.46 16 24 H 0.05 0.98 7.35 -51.93 -0.38 0.60 16 25 H 0.04 0.62 6.91 -51.93 -0.36 0.26 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.33 6.83 6.91 -39.29 -0.27 6.55 16 28 H 0.02 0.50 6.79 -51.93 -0.35 0.15 16 29 H -0.02 -0.46 7.11 -51.93 -0.37 -0.83 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.85 6.65 -51.93 -0.35 0.50 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 278.26 15.07 4.19 4.19 Total: -1.00 -30.52 278.26 -8.33 -38.85 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.77 Total: 3.67 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -2.18 Total: -21.90 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.09 Total: -42.16 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.52 -8.33 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687768308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.217 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds