Wall clock time and date at job start Mon Mar 30 2020 02:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47077 * 2 1 4 4 N 1.46896 * 109.47380 * 119.99799 * 2 1 3 5 5 C 1.46909 * 111.00141 * 275.00501 * 4 2 1 6 6 C 1.50696 * 109.47253 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99790 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99989 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99950 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99950 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46917 * 90.00479 * 10 8 6 12 12 H 1.48503 * 109.47259 * 330.00450 * 10 8 6 13 13 H 1.48501 * 109.47302 * 210.00201 * 10 8 6 14 14 C 1.52996 * 109.47416 * 240.00190 * 2 1 3 15 15 H 1.09001 * 110.51695 * 300.72924 * 14 2 1 16 16 C 1.54834 * 110.58600 * 63.51490 * 14 2 1 17 17 C 1.56197 * 103.68510 * 118.55019 * 16 14 2 18 18 H 1.09004 * 116.28666 * 164.01659 * 17 16 14 19 19 C 1.53362 * 104.07508 * 293.35606 * 17 16 14 20 20 C 1.31794 * 108.42419 * 70.08850 * 19 17 16 21 21 C 1.53355 * 108.42540 * 359.97438 * 20 19 17 22 22 H 1.09007 * 116.33240 * 160.59700 * 21 20 19 23 23 C 1.57259 * 99.80118 * 33.34225 * 21 20 19 24 24 H 1.09000 * 109.47372 * 294.67386 * 1 2 3 25 25 H 1.09005 * 109.47383 * 54.67749 * 1 2 3 26 26 H 1.08999 * 109.47179 * 174.67489 * 1 2 3 27 27 H 1.00894 * 111.00682 * 151.04727 * 4 2 1 28 28 H 1.09004 * 109.47022 * 59.99777 * 5 4 2 29 29 H 1.08997 * 109.46594 * 299.99674 * 5 4 2 30 30 H 0.96994 * 119.99862 * 179.97438 * 9 8 6 31 31 H 1.09001 * 110.58192 * 237.10281 * 16 14 2 32 32 H 1.09001 * 110.57865 * 359.85237 * 16 14 2 33 33 H 1.07997 * 125.78681 * 250.08128 * 19 17 16 34 34 H 1.07995 * 125.78511 * 179.97438 * 20 19 17 35 35 H 1.09003 * 112.52551 * 194.50217 * 23 21 20 36 36 H 1.08991 * 112.52637 * 66.62942 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0824 0.2227 2.3469 6 6 2.5873 -0.5216 3.5561 7 1 2.8363 -1.5698 3.4798 8 6 2.7304 0.1352 4.7598 9 7 3.1715 -0.5143 5.8149 10 14 2.2991 1.9479 4.8918 11 1 0.8694 2.0904 5.2675 12 1 2.5354 2.6095 3.5834 13 1 3.1494 2.5848 5.9293 14 6 2.0400 -0.7212 -1.2492 15 1 1.6756 -1.7482 -1.2730 16 6 1.6121 0.0380 -2.5290 17 6 2.9685 0.4342 -3.1946 18 1 2.9219 0.7413 -4.2395 19 6 3.5838 1.4420 -2.2160 20 6 3.9481 0.7957 -1.1267 21 6 3.6002 -0.6873 -1.3038 22 1 4.1214 -1.3876 -0.6509 23 6 3.8328 -0.8339 -2.8522 24 1 -0.3634 0.4290 0.9338 25 1 -0.3634 0.5942 -0.8385 26 1 -0.3633 -1.0232 -0.0954 27 1 2.9173 -1.1204 1.0288 28 1 1.0869 0.6164 2.5526 29 1 2.7587 1.0463 2.1182 30 1 3.2725 -0.0521 6.6617 31 1 1.0381 -0.6140 -3.1874 32 1 1.0346 0.9262 -2.2725 33 1 3.6992 2.5016 -2.3901 34 1 4.4129 1.2359 -0.2570 35 1 3.4043 -1.7522 -3.2537 36 1 4.8796 -0.7128 -3.1304 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687768308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:08 Heat of formation + Delta-G solvation = 7.983546 kcal Electronic energy + Delta-G solvation = -15473.004331 eV Core-core repulsion = 13149.548847 eV Total energy + Delta-G solvation = -2323.455484 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.85098 -37.47990 -34.85840 -32.67955 -30.66951 -29.65076 -28.29631 -27.97898 -23.94101 -22.38848 -21.30990 -21.01080 -19.04807 -18.46292 -17.55527 -16.96198 -16.38212 -15.97991 -15.35887 -14.61597 -14.41605 -14.04552 -13.75379 -13.48690 -13.23400 -13.14072 -12.77377 -12.56993 -12.29488 -12.20720 -11.97215 -11.91556 -11.85242 -11.64516 -11.41372 -11.32987 -10.91244 -10.83329 -9.79803 -9.07660 -8.33311 -6.37138 1.30134 1.31302 1.35629 1.42599 2.30098 3.00448 3.43098 3.56160 3.68365 3.74645 4.05718 4.22244 4.32985 4.41950 4.47676 4.53845 4.64863 4.74619 4.78325 4.83494 4.90203 5.00941 5.01489 5.07011 5.13119 5.18274 5.27377 5.29847 5.39276 5.41570 5.54609 5.63611 5.98914 6.05316 6.58661 6.66515 6.79095 7.28035 8.83543 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.039230 B = 0.007319 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.576169 B = 3824.695410 C = 3903.790222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.028 0.972 4 N -0.683 5.683 5 C 0.181 3.819 6 C -0.527 4.527 7 H 0.037 0.963 8 C 0.010 3.990 9 N -0.946 5.946 10 Si 0.948 3.052 11 H -0.265 1.265 12 H -0.256 1.256 13 H -0.277 1.277 14 C -0.083 4.083 15 H 0.081 0.919 16 C -0.108 4.108 17 C -0.069 4.069 18 H 0.124 0.876 19 C -0.169 4.169 20 C -0.182 4.182 21 C -0.088 4.088 22 H 0.087 0.913 23 C -0.108 4.108 24 H 0.033 0.967 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.334 0.666 28 H 0.018 0.982 29 H -0.022 1.022 30 H 0.268 0.732 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.766 4.033 -20.625 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.045 0.955 4 N -0.314 5.314 5 C 0.052 3.948 6 C -0.565 4.565 7 H 0.056 0.944 8 C -0.188 4.188 9 N -0.586 5.586 10 Si 0.771 3.229 11 H -0.190 1.190 12 H -0.180 1.180 13 H -0.203 1.203 14 C -0.102 4.102 15 H 0.099 0.901 16 C -0.146 4.146 17 C -0.087 4.087 18 H 0.142 0.858 19 C -0.187 4.187 20 C -0.200 4.200 21 C -0.106 4.106 22 H 0.105 0.895 23 C -0.146 4.146 24 H 0.052 0.948 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.153 0.847 28 H 0.036 0.964 29 H -0.004 1.004 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.150 0.850 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.366 3.801 -20.264 20.753 hybrid contribution 0.841 1.150 1.011 1.747 sum -1.525 4.951 -19.253 19.938 Atomic orbital electron populations 1.21797 0.94641 1.02049 1.00816 1.21670 0.95848 0.95264 0.89460 0.95452 1.60464 1.33098 1.33684 1.04179 1.19684 0.94528 0.91089 0.89466 1.21352 1.43392 0.97278 0.94490 0.94423 1.25845 0.94558 1.03290 0.95103 1.70046 1.48101 1.38830 1.01640 0.85703 0.78965 0.79541 0.78654 1.18993 1.17988 1.20272 1.22453 0.94071 0.99772 0.93866 0.90110 1.22750 0.96712 0.99987 0.95176 1.22985 0.94263 0.93150 0.98263 0.85825 1.24266 0.98791 0.99433 0.96216 1.24050 1.00840 0.96889 0.98210 1.23026 0.95530 0.94002 0.98072 0.89482 1.23984 1.00048 0.98212 0.92310 0.94811 0.90631 0.92286 0.84747 0.96371 1.00409 0.92310 0.89320 0.91572 0.85002 0.88197 0.89356 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.15 71.98 0.66 -3.49 16 2 C 0.09 2.93 1.73 44.91 0.08 3.00 16 3 H 0.03 0.99 6.38 -2.38 -0.02 0.98 16 4 N -0.68 -29.20 6.30 -495.58 -3.12 -32.32 16 5 C 0.18 9.12 4.31 85.55 0.37 9.49 16 6 C -0.53 -31.71 9.87 25.60 0.25 -31.45 16 7 H 0.04 2.50 8.06 -2.91 -0.02 2.47 16 8 C 0.01 0.58 5.47 84.65 0.46 1.04 16 9 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 10 Si 0.95 45.63 27.47 68.60 1.88 47.51 16 11 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.26 -11.71 6.54 99.48 0.65 -11.06 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 C -0.08 -2.17 2.40 -9.08 -0.02 -2.20 16 15 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 16 C -0.11 -2.17 5.45 32.33 0.18 -1.99 16 17 C -0.07 -1.25 5.26 -8.07 -0.04 -1.29 16 18 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 19 C -0.17 -3.86 10.14 25.79 0.26 -3.60 16 20 C -0.18 -5.09 8.28 25.79 0.21 -4.88 16 21 C -0.09 -2.31 4.12 -8.08 -0.03 -2.34 16 22 H 0.09 2.49 7.52 -2.38 -0.02 2.48 16 23 C -0.11 -2.10 6.67 33.58 0.22 -1.88 16 24 H 0.03 1.16 7.35 -2.39 -0.02 1.14 16 25 H 0.07 1.85 6.91 -2.38 -0.02 1.83 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.33 14.17 6.91 -89.70 -0.62 13.55 16 28 H 0.02 0.93 6.79 -2.38 -0.02 0.91 16 29 H -0.02 -1.10 7.11 -2.39 -0.02 -1.11 16 30 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.38 6.65 -2.39 -0.02 1.37 16 33 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.10 3.19 8.06 -2.91 -0.02 3.17 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -67.02 278.26 2.03 -64.99 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.37 Total: 19.48 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 2.60 Total: -39.60 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -2.82 Total: -92.38 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.51 kcal Total: -67.02 2.03 -64.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687768308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.970 kcal (2) G-P(sol) polarization free energy of solvation -67.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds