Wall clock time and date at job start Mon Mar 30 2020 02:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46841 * 2 1 4 4 N 1.46898 * 109.46858 * 240.00303 * 2 1 3 5 5 C 1.46907 * 110.99823 * 84.99917 * 4 2 1 6 6 C 1.50698 * 109.46961 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00116 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99732 * 179.97438 * 8 6 5 10 10 Si 1.86792 * 119.99940 * 0.02562 * 8 6 5 11 11 H 1.48507 * 109.47093 * 89.99656 * 10 8 6 12 12 H 1.48493 * 109.47446 * 209.99954 * 10 8 6 13 13 H 1.48506 * 109.47102 * 329.99867 * 10 8 6 14 14 C 1.52996 * 109.47021 * 120.00183 * 2 1 3 15 15 H 1.09001 * 110.51934 * 61.98184 * 14 2 1 16 16 C 1.56893 * 110.49772 * 297.82261 * 14 2 1 17 17 C 1.56198 * 103.86082 * 241.52267 * 16 14 2 18 18 H 1.09005 * 116.94030 * 163.87697 * 17 16 14 19 19 C 1.53361 * 104.07647 * 293.69294 * 17 16 14 20 20 C 1.31793 * 108.42104 * 70.08872 * 19 17 16 21 21 C 1.53361 * 108.42743 * 359.97438 * 20 19 17 22 22 H 1.09003 * 116.33284 * 159.72296 * 21 20 19 23 23 C 1.57258 * 100.39883 * 36.66579 * 17 16 14 24 24 H 1.08997 * 109.46881 * 185.50655 * 1 2 3 25 25 H 1.09001 * 109.46952 * 305.50209 * 1 2 3 26 26 H 1.08999 * 109.47588 * 65.49972 * 1 2 3 27 27 H 1.00897 * 110.99968 * 208.95229 * 4 2 1 28 28 H 1.08999 * 109.46886 * 299.99952 * 5 4 2 29 29 H 1.08996 * 109.47062 * 60.00127 * 5 4 2 30 30 H 0.97006 * 119.99656 * 180.02562 * 9 8 6 31 31 H 1.08995 * 110.20587 * 123.05313 * 16 14 2 32 32 H 1.09005 * 110.78957 * 0.27089 * 16 14 2 33 33 H 1.07997 * 125.78866 * 250.12016 * 19 17 16 34 34 H 1.08003 * 125.78774 * 180.02562 * 20 19 17 35 35 H 1.08993 * 112.52624 * 59.08172 * 23 17 16 36 36 H 1.08996 * 112.52235 * 186.95268 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2228 -2.3469 6 6 2.5883 -0.5213 -3.5558 7 1 2.8379 -1.5693 -3.4794 8 6 2.7317 0.1357 -4.7595 9 7 3.1737 -0.5136 -5.8143 10 14 2.2994 1.9480 -4.8917 11 1 3.4998 2.7669 -4.5853 12 1 1.8349 2.2469 -6.2701 13 1 1.2197 2.2712 -3.9246 14 6 2.0400 -0.7213 1.2492 15 1 1.7152 -1.7618 1.2489 16 6 1.5764 0.0310 2.5456 17 6 2.9145 0.4521 3.2326 18 1 2.8529 1.2171 4.0067 19 6 3.5591 -0.8782 3.6408 20 6 3.9523 -1.5028 2.5489 21 6 3.5964 -0.6323 1.3376 22 1 4.1446 -0.8362 0.4178 23 6 3.7862 0.7956 1.9695 24 1 -0.3633 -1.0229 0.0986 25 1 -0.3633 0.5968 0.8366 26 1 -0.3634 0.4262 -0.9351 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6165 -2.5524 29 1 2.7588 1.0463 -2.1182 30 1 3.2749 -0.0513 -6.6611 31 1 1.0105 -0.6422 3.1895 32 1 0.9829 0.9094 2.2920 33 1 3.6713 -1.2418 4.6515 34 1 4.4415 -2.4651 2.5132 35 1 3.3452 1.5839 1.3597 36 1 4.8252 1.0052 2.2237 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687768309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:10 Heat of formation + Delta-G solvation = 27.034488 kcal Electronic energy + Delta-G solvation = -15323.081416 eV Core-core repulsion = 13000.452042 eV Total energy + Delta-G solvation = -2322.629373 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67137 -36.08368 -32.82160 -31.09535 -29.16078 -28.55462 -27.10514 -26.43382 -22.54785 -20.86145 -20.42102 -19.22411 -17.87240 -16.86720 -16.38709 -15.54224 -14.84338 -14.30983 -13.63323 -13.56010 -12.66055 -12.55357 -12.35319 -12.03885 -11.74889 -11.69464 -11.33125 -11.25510 -11.10649 -11.01736 -10.87570 -10.62784 -10.38960 -10.26263 -9.80486 -9.67877 -9.22478 -8.84946 -8.58092 -7.41116 -6.04173 -4.01554 2.27289 3.29107 3.36681 3.39834 4.43513 4.52059 4.55531 4.68647 4.99476 5.06342 5.26055 5.29292 5.37728 5.40341 5.48368 5.58629 5.74383 5.78711 5.84391 5.94374 6.05038 6.10071 6.17761 6.23724 6.28636 6.36062 6.51258 6.54478 6.71462 6.85974 6.99367 7.06086 7.66613 7.96639 8.41561 8.68833 9.04353 9.58328 11.09266 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.041118 B = 0.006820 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.809781 B = 4104.758322 C = 4242.575225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.088 3.912 3 H 0.034 0.966 4 N -0.676 5.676 5 C 0.165 3.835 6 C -0.514 4.514 7 H 0.078 0.922 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.877 3.123 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.267 1.267 14 C -0.084 4.084 15 H 0.081 0.919 16 C -0.111 4.111 17 C -0.080 4.080 18 H 0.095 0.905 19 C -0.176 4.176 20 C -0.157 4.157 21 C -0.079 4.079 22 H 0.101 0.899 23 C -0.122 4.122 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.334 0.666 28 H 0.026 0.974 29 H -0.022 1.022 30 H 0.263 0.737 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 2.429 18.237 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 H 0.052 0.948 4 N -0.308 5.308 5 C 0.037 3.963 6 C -0.553 4.553 7 H 0.097 0.903 8 C -0.134 4.134 9 N -0.540 5.540 10 Si 0.704 3.296 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.102 4.102 15 H 0.100 0.900 16 C -0.149 4.149 17 C -0.098 4.098 18 H 0.114 0.886 19 C -0.194 4.194 20 C -0.175 4.175 21 C -0.098 4.098 22 H 0.119 0.881 23 C -0.159 4.159 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.153 0.847 28 H 0.044 0.956 29 H -0.005 1.005 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.607 2.201 17.852 18.059 hybrid contribution 0.607 1.373 -0.002 1.502 sum -0.999 3.574 17.850 18.232 Atomic orbital electron populations 1.21792 0.95406 1.01556 1.00743 1.21498 0.95444 0.95540 0.89754 0.94766 1.60547 1.33074 1.33907 1.03299 1.20027 0.95664 0.91065 0.89527 1.21086 1.43109 0.98686 0.92383 0.90348 1.24906 0.94810 0.97960 0.95682 1.69904 1.46730 1.36496 1.00897 0.86831 0.79223 0.86034 0.77465 1.20384 1.21168 1.19169 1.22844 0.93502 0.99955 0.93931 0.90014 1.23082 0.95984 0.99938 0.95944 1.22899 0.95400 0.94963 0.96552 0.88641 1.24018 1.00083 0.97460 0.97863 1.24118 0.99216 0.99310 0.94841 1.23013 0.96115 0.93934 0.96713 0.88052 1.24079 0.99364 0.96872 0.95588 0.92494 0.93549 0.92593 0.84676 0.95631 1.00484 0.92696 0.91820 0.91126 0.86107 0.85837 0.90707 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.13 37.16 0.34 -1.84 16 2 C 0.09 1.49 2.07 -67.71 -0.14 1.35 16 3 H 0.03 0.60 6.62 -51.93 -0.34 0.26 16 4 N -0.68 -14.14 6.30 -107.99 -0.68 -14.82 16 5 C 0.17 4.07 4.31 -4.97 -0.02 4.05 16 6 C -0.51 -14.92 9.87 -34.44 -0.34 -15.26 16 7 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 10 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 14 C -0.08 -1.17 2.15 -86.83 -0.19 -1.36 16 15 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 16 C -0.11 -1.32 5.47 -22.91 -0.13 -1.45 16 17 C -0.08 -0.89 5.26 -86.40 -0.45 -1.34 16 18 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 19 C -0.18 -1.94 10.14 -34.86 -0.35 -2.30 16 20 C -0.16 -1.89 10.13 -34.86 -0.35 -2.24 16 21 C -0.08 -1.08 4.27 -86.41 -0.37 -1.45 16 22 H 0.10 1.51 6.82 -51.93 -0.35 1.15 16 23 C -0.12 -1.53 6.61 -22.08 -0.15 -1.67 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.61 6.83 -51.93 -0.35 0.26 16 26 H 0.05 0.98 7.35 -51.93 -0.38 0.60 16 27 H 0.33 6.79 6.68 -39.29 -0.26 6.53 16 28 H 0.03 0.65 6.41 -51.93 -0.33 0.32 16 29 H -0.02 -0.55 7.48 -51.93 -0.39 -0.94 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.07 0.82 6.67 -51.93 -0.35 0.48 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.07 0.99 7.01 -51.93 -0.36 0.63 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 278.30 15.07 4.19 4.19 Total: -1.00 -30.35 278.30 -8.30 -38.65 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.67 Total: 3.57 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -2.25 Total: -21.61 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.09 Total: -42.04 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.35 -8.30 -38.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687768309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.686 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds