Wall clock time and date at job start Mon Mar 30 2020 02:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46841 * 2 1 4 4 N 1.46898 * 109.46858 * 240.00303 * 2 1 3 5 5 C 1.46907 * 110.99823 * 84.99917 * 4 2 1 6 6 C 1.50698 * 109.46961 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00116 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99732 * 179.97438 * 8 6 5 10 10 Si 1.86792 * 119.99940 * 0.02562 * 8 6 5 11 11 H 1.48507 * 109.47093 * 89.99656 * 10 8 6 12 12 H 1.48493 * 109.47446 * 209.99954 * 10 8 6 13 13 H 1.48506 * 109.47102 * 329.99867 * 10 8 6 14 14 C 1.52996 * 109.47021 * 120.00183 * 2 1 3 15 15 H 1.09001 * 110.51934 * 61.98184 * 14 2 1 16 16 C 1.56893 * 110.49772 * 297.82261 * 14 2 1 17 17 C 1.56198 * 103.86082 * 241.52267 * 16 14 2 18 18 H 1.09005 * 116.94030 * 163.87697 * 17 16 14 19 19 C 1.53361 * 104.07647 * 293.69294 * 17 16 14 20 20 C 1.31793 * 108.42104 * 70.08872 * 19 17 16 21 21 C 1.53361 * 108.42743 * 359.97438 * 20 19 17 22 22 H 1.09003 * 116.33284 * 159.72296 * 21 20 19 23 23 C 1.57258 * 100.39883 * 36.66579 * 17 16 14 24 24 H 1.08997 * 109.46881 * 185.50655 * 1 2 3 25 25 H 1.09001 * 109.46952 * 305.50209 * 1 2 3 26 26 H 1.08999 * 109.47588 * 65.49972 * 1 2 3 27 27 H 1.00897 * 110.99968 * 208.95229 * 4 2 1 28 28 H 1.08999 * 109.46886 * 299.99952 * 5 4 2 29 29 H 1.08996 * 109.47062 * 60.00127 * 5 4 2 30 30 H 0.97006 * 119.99656 * 180.02562 * 9 8 6 31 31 H 1.08995 * 110.20587 * 123.05313 * 16 14 2 32 32 H 1.09005 * 110.78957 * 0.27089 * 16 14 2 33 33 H 1.07997 * 125.78866 * 250.12016 * 19 17 16 34 34 H 1.08003 * 125.78774 * 180.02562 * 20 19 17 35 35 H 1.08993 * 112.52624 * 59.08172 * 23 17 16 36 36 H 1.08996 * 112.52235 * 186.95268 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2228 -2.3469 6 6 2.5883 -0.5213 -3.5558 7 1 2.8379 -1.5693 -3.4794 8 6 2.7317 0.1357 -4.7595 9 7 3.1737 -0.5136 -5.8143 10 14 2.2994 1.9480 -4.8917 11 1 3.4998 2.7669 -4.5853 12 1 1.8349 2.2469 -6.2701 13 1 1.2197 2.2712 -3.9246 14 6 2.0400 -0.7213 1.2492 15 1 1.7152 -1.7618 1.2489 16 6 1.5764 0.0310 2.5456 17 6 2.9145 0.4521 3.2326 18 1 2.8529 1.2171 4.0067 19 6 3.5591 -0.8782 3.6408 20 6 3.9523 -1.5028 2.5489 21 6 3.5964 -0.6323 1.3376 22 1 4.1446 -0.8362 0.4178 23 6 3.7862 0.7956 1.9695 24 1 -0.3633 -1.0229 0.0986 25 1 -0.3633 0.5968 0.8366 26 1 -0.3634 0.4262 -0.9351 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6165 -2.5524 29 1 2.7588 1.0463 -2.1182 30 1 3.2749 -0.0513 -6.6611 31 1 1.0105 -0.6422 3.1895 32 1 0.9829 0.9094 2.2920 33 1 3.6713 -1.2418 4.6515 34 1 4.4415 -2.4651 2.5132 35 1 3.3452 1.5839 1.3597 36 1 4.8252 1.0052 2.2237 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687768309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:10 Heat of formation + Delta-G solvation = 7.910859 kcal Electronic energy + Delta-G solvation = -15323.910679 eV Core-core repulsion = 13000.452042 eV Total energy + Delta-G solvation = -2323.458636 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.68357 -37.61877 -34.88802 -32.70845 -30.31665 -29.60247 -28.40674 -28.04887 -24.09762 -22.57011 -21.43267 -20.45019 -18.94080 -18.79251 -17.54559 -16.80028 -16.49569 -15.88627 -15.39370 -14.87995 -14.48798 -13.91481 -13.74127 -13.49314 -13.07658 -13.04496 -12.69763 -12.55780 -12.42003 -12.20464 -12.08417 -11.90038 -11.77385 -11.62924 -11.53577 -11.32926 -10.89773 -10.83252 -9.76932 -9.11570 -8.32162 -6.36382 1.31632 1.34002 1.38268 1.45482 2.31918 3.01674 3.37903 3.58604 3.65281 3.73972 4.05483 4.22743 4.26841 4.39339 4.43643 4.52700 4.63602 4.72986 4.75477 4.81085 4.85972 4.96346 5.00679 5.08250 5.13516 5.17499 5.24621 5.28483 5.37214 5.41660 5.57308 5.58740 5.99424 6.10983 6.58511 6.66849 6.78117 7.28789 8.84776 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.041118 B = 0.006820 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.809781 B = 4104.758322 C = 4242.575225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.032 0.968 4 N -0.686 5.686 5 C 0.179 3.821 6 C -0.528 4.528 7 H 0.036 0.964 8 C 0.008 3.992 9 N -0.947 5.947 10 Si 0.950 3.050 11 H -0.266 1.266 12 H -0.278 1.278 13 H -0.252 1.252 14 C -0.079 4.079 15 H 0.071 0.929 16 C -0.106 4.106 17 C -0.072 4.072 18 H 0.121 0.879 19 C -0.162 4.162 20 C -0.176 4.176 21 C -0.092 4.092 22 H 0.077 0.923 23 C -0.124 4.124 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.035 0.965 27 H 0.334 0.666 28 H 0.023 0.977 29 H -0.019 1.019 30 H 0.268 0.732 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.065 0.935 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.776 4.228 20.710 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.050 0.950 4 N -0.318 5.318 5 C 0.050 3.950 6 C -0.567 4.567 7 H 0.054 0.946 8 C -0.189 4.189 9 N -0.587 5.587 10 Si 0.773 3.227 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.176 1.176 14 C -0.098 4.098 15 H 0.090 0.910 16 C -0.143 4.143 17 C -0.090 4.090 18 H 0.139 0.861 19 C -0.179 4.179 20 C -0.194 4.194 21 C -0.110 4.110 22 H 0.095 0.905 23 C -0.161 4.161 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.153 0.847 28 H 0.041 0.959 29 H -0.002 1.002 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.163 0.837 34 H 0.147 0.853 35 H 0.084 0.916 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.377 3.989 20.351 20.874 hybrid contribution 0.879 0.705 -0.765 1.362 sum -1.498 4.694 19.585 20.196 Atomic orbital electron populations 1.21786 0.94392 1.01981 1.01038 1.21626 0.96145 0.95294 0.89224 0.95033 1.60478 1.33217 1.33847 1.04282 1.19733 0.94933 0.91031 0.89286 1.21357 1.43395 0.97281 0.94621 0.94612 1.25878 0.94475 1.03512 0.95053 1.70055 1.48032 1.38929 1.01720 0.85671 0.79712 0.79249 0.78043 1.19075 1.20377 1.17556 1.22751 0.93908 0.99288 0.93835 0.91047 1.23057 0.96612 1.00074 0.94602 1.22977 0.94248 0.95538 0.96228 0.86125 1.24270 0.98316 0.96834 0.98493 1.24121 1.00945 0.99884 0.94429 1.22992 0.95666 0.95633 0.96730 0.90477 1.24091 1.00055 0.95654 0.96314 0.92617 0.90314 0.94596 0.84733 0.95895 1.00168 0.92318 0.90530 0.90435 0.83735 0.85264 0.91613 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 9.13 71.98 0.66 -3.40 16 2 C 0.09 2.86 2.07 44.92 0.09 2.95 16 3 H 0.03 1.08 6.62 -2.39 -0.02 1.06 16 4 N -0.69 -29.19 6.30 -495.58 -3.12 -32.32 16 5 C 0.18 8.89 4.31 85.56 0.37 9.26 16 6 C -0.53 -31.64 9.87 25.60 0.25 -31.39 16 7 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 8 C 0.01 0.50 5.47 84.66 0.46 0.96 16 9 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 10 Si 0.95 45.09 27.47 68.60 1.88 46.98 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 14 C -0.08 -2.13 2.15 -8.34 -0.02 -2.15 16 15 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 16 C -0.11 -2.17 5.47 33.07 0.18 -1.99 16 17 C -0.07 -1.34 5.26 -8.06 -0.04 -1.39 16 18 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 19 C -0.16 -3.03 10.14 25.79 0.26 -2.77 16 20 C -0.18 -3.97 10.13 25.79 0.26 -3.71 16 21 C -0.09 -2.46 4.27 -8.07 -0.03 -2.49 16 22 H 0.08 2.40 6.82 -2.39 -0.02 2.38 16 23 C -0.12 -2.89 6.61 33.61 0.22 -2.67 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.08 1.85 6.83 -2.39 -0.02 1.83 16 26 H 0.03 1.21 7.35 -2.39 -0.02 1.19 16 27 H 0.33 14.13 6.68 -89.70 -0.60 13.53 16 28 H 0.02 1.16 6.41 -2.39 -0.02 1.14 16 29 H -0.02 -0.94 7.48 -2.39 -0.02 -0.96 16 30 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 31 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 32 H 0.08 1.51 6.67 -2.38 -0.02 1.49 16 33 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.07 1.64 7.01 -2.39 -0.02 1.62 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -66.43 278.30 2.12 -64.31 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.40 Total: 19.82 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 2.67 Total: -38.77 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -2.82 Total: -92.33 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.98 kcal Total: -66.43 2.12 -64.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687768309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.217 kcal (2) G-P(sol) polarization free energy of solvation -66.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds