Wall clock time and date at job start Mon Mar 30 2020 02:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47488 * 2 1 4 4 H 1.09007 * 109.46915 * 304.24095 * 3 2 1 5 5 C 1.50702 * 109.47560 * 184.24566 * 3 2 1 6 6 H 1.07997 * 119.99794 * 239.99977 * 5 3 2 7 7 C 1.37873 * 120.00145 * 59.99369 * 5 3 2 8 8 N 1.31524 * 120.00150 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00219 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46805 * 60.00291 * 9 7 5 11 11 H 1.48500 * 109.47350 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47287 * 300.00346 * 9 7 5 13 13 N 1.46897 * 109.47072 * 64.24091 * 3 2 1 14 14 C 1.46905 * 111.00123 * 205.09860 * 13 3 2 15 15 H 1.09010 * 110.51930 * 323.04583 * 14 13 3 16 16 C 1.54832 * 110.58247 * 85.83067 * 14 13 3 17 17 C 1.56201 * 103.68134 * 118.55283 * 16 14 13 18 18 H 1.09005 * 116.28673 * 164.01014 * 17 16 14 19 19 C 1.53357 * 104.07615 * 293.35314 * 17 16 14 20 20 C 1.31796 * 108.42406 * 70.08668 * 19 17 16 21 21 C 1.53679 * 108.52697 * 359.97438 * 20 19 17 22 22 H 1.08992 * 116.56510 * 160.67496 * 21 20 19 23 23 C 1.57254 * 100.39884 * 36.32196 * 17 16 14 24 24 H 1.09002 * 109.47408 * 294.72853 * 1 2 3 25 25 H 1.09000 * 109.46835 * 54.72890 * 1 2 3 26 26 H 1.08997 * 109.47417 * 174.72392 * 1 2 3 27 27 H 1.09003 * 109.47096 * 239.99279 * 2 1 3 28 28 H 1.08996 * 109.46881 * 120.00138 * 2 1 3 29 29 H 0.96992 * 120.00397 * 179.97438 * 8 7 5 30 30 H 1.00904 * 111.00034 * 81.14920 * 13 3 2 31 31 H 1.08998 * 110.58231 * 237.09783 * 16 14 13 32 32 H 1.08995 * 110.58268 * 0.02562 * 16 14 13 33 33 H 1.07998 * 125.78609 * 250.08855 * 19 17 16 34 34 H 1.07998 * 125.78637 * 179.97438 * 20 19 17 35 35 H 1.09002 * 112.52609 * 59.08594 * 23 17 16 36 36 H 1.08996 * 112.52367 * 186.94945 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6160 1.9777 -0.8496 5 6 3.5434 1.4437 -0.1052 6 1 4.1389 1.8917 0.6764 7 6 4.1584 0.8729 -1.1992 8 7 3.4331 0.3277 -2.1513 9 14 6.0219 0.8739 -1.3292 10 1 6.5992 0.1442 -0.1718 11 1 6.4305 0.2050 -2.5905 12 1 6.5174 2.2737 -1.3289 13 7 1.6358 2.1047 1.2473 14 6 1.5570 3.5607 1.0687 15 1 2.3495 3.9078 0.4055 16 6 0.1686 3.9671 0.5169 17 6 -0.4176 4.8885 1.6337 18 1 -1.2698 5.5069 1.3514 19 6 -0.6264 3.9449 2.8244 20 6 0.5554 3.5990 3.2940 21 6 1.6378 4.2879 2.4481 22 1 2.6288 4.3669 2.8949 23 6 0.8873 5.6290 2.1047 24 1 -0.3634 0.4299 0.9334 25 1 -0.3633 0.5934 -0.8390 26 1 -0.3634 -1.0233 -0.0945 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5138 0.8899 29 1 3.8657 -0.0736 -2.9211 30 1 2.2613 1.8664 2.0024 31 1 0.2739 4.5176 -0.4179 32 1 -0.4603 3.0879 0.3768 33 1 -1.5803 3.6191 3.2122 34 1 0.7343 2.9419 4.1323 35 1 1.3695 6.1798 1.2970 36 1 0.7201 6.2512 2.9838 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698719181.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:10 Heat of formation + Delta-G solvation = 10.085803 kcal Electronic energy + Delta-G solvation = -15680.414911 eV Core-core repulsion = 13357.050587 eV Total energy + Delta-G solvation = -2323.364323 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.41077 -37.48573 -34.14340 -32.70855 -30.73915 -29.24504 -28.56356 -26.70735 -24.49335 -21.78768 -21.39950 -20.86188 -18.64299 -18.51412 -17.38562 -16.79059 -16.51918 -15.50095 -15.02057 -14.58168 -14.26100 -13.54744 -13.48005 -13.26599 -13.08619 -12.87711 -12.60835 -12.49408 -12.20042 -12.13841 -12.09659 -11.88476 -11.64316 -11.47034 -11.28882 -11.11095 -10.85516 -10.46120 -9.61762 -8.95807 -8.04739 -6.28088 1.37288 1.37659 1.45419 1.59988 2.38862 3.13477 3.57983 3.73592 3.79206 4.00422 4.28116 4.49253 4.51229 4.56193 4.62242 4.74395 4.76076 4.84934 4.92431 5.02668 5.08535 5.14654 5.19641 5.22814 5.37387 5.40075 5.44871 5.53631 5.65423 5.71920 5.79446 6.12398 6.22197 6.28118 6.44663 6.88222 7.05776 7.43708 8.90585 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.032765 B = 0.008853 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.373699 B = 3161.935402 C = 3623.735071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.101 4.101 3 C 0.225 3.775 4 H -0.005 1.005 5 C -0.559 4.559 6 H 0.048 0.952 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.663 5.663 14 C 0.088 3.912 15 H 0.014 0.986 16 C -0.108 4.108 17 C -0.069 4.069 18 H 0.115 0.885 19 C -0.172 4.172 20 C -0.145 4.145 21 C -0.085 4.085 22 H 0.095 0.905 23 C -0.110 4.110 24 H 0.056 0.944 25 H 0.028 0.972 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.026 0.974 29 H 0.261 0.739 30 H 0.325 0.675 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.070 0.930 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.110 7.695 8.439 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.140 4.140 3 C 0.116 3.884 4 H 0.013 0.987 5 C -0.598 4.598 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.291 5.291 14 C -0.023 4.023 15 H 0.032 0.968 16 C -0.146 4.146 17 C -0.087 4.087 18 H 0.133 0.867 19 C -0.190 4.190 20 C -0.163 4.163 21 C -0.103 4.103 22 H 0.114 0.886 23 C -0.147 4.147 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.089 0.911 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.774 7.484 8.128 12.960 hybrid contribution 2.196 -0.245 -0.690 2.315 sum -4.577 7.238 7.439 11.344 Atomic orbital electron populations 1.21520 0.96452 0.99322 1.00482 1.21341 0.94325 0.98530 0.99809 1.18887 0.91159 0.91287 0.87071 0.98717 1.22171 0.94211 1.37717 1.05750 0.93406 1.25679 1.02146 0.94827 0.95459 1.70006 1.36499 1.38643 1.09898 0.85749 0.81086 0.78165 0.77447 1.19679 1.20857 1.20104 1.60937 1.54521 1.06342 1.07295 1.22563 0.95649 0.88702 0.95350 0.96812 1.22720 0.96005 0.98806 0.97105 1.22924 0.97433 0.95005 0.93359 0.86681 1.24009 0.97969 1.00568 0.96448 1.23875 0.94391 0.99538 0.98493 1.23212 0.97931 0.95330 0.93849 0.88644 1.23992 0.94408 0.95356 1.00978 0.92458 0.95321 0.93862 0.92312 0.95486 0.92929 0.85828 0.93065 0.92445 0.84827 0.85598 0.91131 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.73 71.98 0.70 -4.30 16 2 C -0.10 -4.99 5.45 30.59 0.17 -4.82 16 3 C 0.22 11.43 1.85 44.17 0.08 11.51 16 4 H -0.01 -0.30 7.72 -2.38 -0.02 -0.32 16 5 C -0.56 -30.85 8.30 25.60 0.21 -30.64 16 6 H 0.05 2.61 7.74 -2.91 -0.02 2.58 16 7 C 0.02 1.05 5.29 84.65 0.45 1.50 16 8 N -0.91 -52.99 11.30 21.45 0.24 -52.75 16 9 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.66 -27.86 4.73 -464.54 -2.20 -30.06 16 14 C 0.09 3.33 2.69 46.63 0.13 3.46 16 15 H 0.01 0.62 7.74 -2.38 -0.02 0.60 16 16 C -0.11 -3.69 5.85 32.33 0.19 -3.50 16 17 C -0.07 -1.79 5.26 -8.06 -0.04 -1.83 16 18 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 19 C -0.17 -4.48 10.14 25.79 0.26 -4.22 16 20 C -0.14 -4.00 9.34 25.90 0.24 -3.76 16 21 C -0.08 -2.52 4.90 -7.90 -0.04 -2.56 16 22 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 23 C -0.11 -2.72 6.67 33.67 0.22 -2.50 16 24 H 0.06 2.25 7.88 -2.39 -0.02 2.23 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 3.26 5.97 -2.39 -0.01 3.24 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.33 13.67 8.07 -89.69 -0.72 12.94 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 2.16 7.92 -2.39 -0.02 2.14 16 33 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -59.05 284.95 2.95 -56.10 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.31 Total: 22.39 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 2.57 Total: -41.67 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -1.96 Total: -82.81 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -59.05 2.95 -56.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698719181.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.184 kcal (2) G-P(sol) polarization free energy of solvation -59.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds