Wall clock time and date at job start Mon Mar 30 2020 02:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47426 * 2 1 4 4 H 1.08999 * 109.46637 * 55.24753 * 3 2 1 5 5 C 1.50703 * 109.47062 * 175.24543 * 3 2 1 6 6 H 1.07999 * 119.99531 * 120.00184 * 5 3 2 7 7 C 1.37872 * 119.99900 * 299.99987 * 5 3 2 8 8 N 1.31517 * 120.00266 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99776 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47089 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47119 * 120.00331 * 9 7 5 12 12 H 1.48501 * 109.47573 * 240.00236 * 9 7 5 13 13 N 1.46901 * 109.47197 * 295.24604 * 3 2 1 14 14 C 1.46906 * 110.99763 * 153.99644 * 13 3 2 15 15 H 1.08997 * 110.51785 * 33.31152 * 14 13 3 16 16 C 1.58199 * 112.03530 * 270.69003 * 14 13 3 17 17 C 1.56202 * 102.82903 * 242.46012 * 16 14 13 18 18 H 1.08999 * 116.28551 * 162.72027 * 17 16 14 19 19 C 1.53359 * 104.07626 * 292.06024 * 17 16 14 20 20 C 1.31798 * 108.42178 * 71.22373 * 19 17 16 21 21 C 1.53357 * 108.42546 * 359.60542 * 20 19 17 22 22 H 1.08998 * 116.26059 * 159.96525 * 21 20 19 23 23 C 1.57255 * 101.22162 * 35.27881 * 17 16 14 24 24 H 1.09001 * 109.47021 * 56.33785 * 1 2 3 25 25 H 1.09000 * 109.47576 * 176.34061 * 1 2 3 26 26 H 1.09000 * 109.47154 * 296.34402 * 1 2 3 27 27 H 1.09010 * 109.46968 * 240.00334 * 2 1 3 28 28 H 1.08996 * 109.47158 * 120.00626 * 2 1 3 29 29 H 0.97002 * 119.99558 * 179.97438 * 8 7 5 30 30 H 1.00901 * 111.00184 * 277.95280 * 13 3 2 31 31 H 1.08997 * 112.09329 * 123.67208 * 16 14 13 32 32 H 1.08995 * 109.87670 * 0.21368 * 16 14 13 33 33 H 1.07993 * 125.78929 * 250.95914 * 19 17 16 34 34 H 1.08000 * 125.78502 * 179.73435 * 20 19 17 35 35 H 1.09001 * 112.52002 * 58.88967 * 23 17 16 36 36 H 1.08998 * 112.52398 * 186.74982 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6089 1.9802 0.8444 5 6 3.5425 1.4440 0.1178 6 1 4.1446 1.8897 -0.6602 7 6 4.1482 0.8765 1.2186 8 7 3.4150 0.3334 2.1657 9 14 6.0105 0.8778 1.3642 10 1 6.5995 1.5447 0.1753 11 1 6.4106 1.6116 2.5917 12 1 6.5021 -0.5214 1.4417 13 7 1.6464 2.1011 -1.2527 14 6 1.5452 3.5557 -1.0735 15 1 2.2811 3.9033 -0.3485 16 6 0.0969 3.9980 -0.6159 17 6 -0.3795 4.9012 -1.7979 18 1 -1.4509 5.0925 -1.8577 19 6 0.5281 6.1345 -1.7143 20 6 1.7422 5.7843 -2.0892 21 6 1.7297 4.2913 -2.4390 22 1 2.5435 3.9374 -3.0719 23 6 0.2758 4.1692 -3.0257 24 1 -0.3633 0.5696 -0.8554 25 1 -0.3634 -1.0255 -0.0656 26 1 -0.3633 0.4560 0.9209 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8413 -0.0662 2.9400 30 1 2.2866 1.8722 -1.9983 31 1 0.1163 4.5642 0.3153 32 1 -0.5450 3.1223 -0.5199 33 1 0.2232 7.1233 -1.4051 34 1 2.6007 6.4376 -2.1393 35 1 -0.0517 3.1337 -3.1180 36 1 0.1532 4.7234 -3.9563 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698719183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:15 Heat of formation + Delta-G solvation = 23.441647 kcal Electronic energy + Delta-G solvation = -15581.122782 eV Core-core repulsion = 13258.337612 eV Total energy + Delta-G solvation = -2322.785171 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.03241 -35.69954 -32.25684 -30.98753 -29.20518 -27.89074 -26.84903 -25.31225 -22.67383 -20.36082 -19.70586 -19.28270 -17.56748 -16.53744 -16.11013 -15.04961 -14.53056 -14.23278 -13.41603 -12.78890 -12.48536 -12.31989 -11.92983 -11.34346 -11.29746 -11.18992 -10.96424 -10.87637 -10.83832 -10.77809 -10.54423 -10.30270 -10.14874 -9.86135 -9.54433 -9.41222 -8.99222 -8.57867 -8.35739 -7.19048 -5.97788 -4.10618 2.51650 3.26243 3.34832 3.37981 4.40521 4.86270 4.92376 5.08834 5.22090 5.28421 5.51390 5.68369 5.75902 5.83457 5.92243 6.07014 6.30769 6.38344 6.41445 6.46879 6.53523 6.54957 6.60911 6.70246 6.76142 6.85297 7.16974 7.21179 7.25629 7.49655 7.64043 7.80552 8.13004 8.19790 8.38736 8.72182 9.03499 9.57010 11.02095 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.030104 B = 0.008884 C = 0.007499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.887429 B = 3151.042029 C = 3732.891838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.679 5.679 14 C 0.099 3.901 15 H 0.048 0.952 16 C -0.108 4.108 17 C -0.080 4.080 18 H 0.090 0.910 19 C -0.172 4.172 20 C -0.164 4.164 21 C -0.081 4.081 22 H 0.092 0.908 23 C -0.111 4.111 24 H 0.050 0.950 25 H 0.023 0.977 26 H 0.035 0.965 27 H 0.029 0.971 28 H 0.089 0.911 29 H 0.260 0.740 30 H 0.328 0.672 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.443 7.071 -7.017 11.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.309 5.309 14 C -0.012 4.012 15 H 0.066 0.934 16 C -0.146 4.146 17 C -0.099 4.099 18 H 0.108 0.892 19 C -0.191 4.191 20 C -0.182 4.182 21 C -0.100 4.100 22 H 0.110 0.890 23 C -0.148 4.148 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.100 6.845 -6.718 11.366 hybrid contribution 2.164 0.352 0.402 2.229 sum -3.936 7.197 -6.316 10.353 Atomic orbital electron populations 1.21716 0.99080 0.98375 1.00346 1.21489 0.92057 0.99323 1.01561 1.19159 0.92616 0.91123 0.86332 0.95071 1.21919 0.92827 1.37863 1.05575 0.92881 1.24934 0.97853 0.95073 0.95727 1.69893 1.34672 1.38298 1.09480 0.86621 0.86229 0.77708 0.77912 1.19948 1.21104 1.20968 1.60753 1.54747 1.05518 1.09893 1.23013 0.95183 0.89199 0.93762 0.93366 1.23281 0.97381 0.98176 0.95771 1.22894 0.97360 0.93203 0.96396 0.89180 1.24065 0.96113 0.97826 1.01051 1.24051 0.97176 0.96385 1.00575 1.23055 0.97258 0.92479 0.97224 0.88983 1.23969 0.94155 1.00682 0.96039 0.93113 0.95750 0.94627 0.95187 0.89281 0.92992 0.85438 0.92423 0.90697 0.86366 0.86281 0.89848 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.84 37.16 0.37 -2.48 16 2 C -0.11 -2.54 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.30 1.86 -68.86 -0.13 5.17 16 4 H 0.03 0.86 7.84 -51.93 -0.41 0.45 16 5 C -0.54 -14.62 8.35 -34.44 -0.29 -14.91 16 6 H 0.05 1.43 7.73 -52.49 -0.41 1.02 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -25.11 11.29 55.43 0.63 -24.49 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 N -0.68 -14.00 5.44 -96.21 -0.52 -14.53 16 14 C 0.10 1.87 2.42 -63.13 -0.15 1.72 16 15 H 0.05 1.06 7.70 -51.93 -0.40 0.66 16 16 C -0.11 -1.84 6.29 -22.15 -0.14 -1.98 16 17 C -0.08 -1.14 5.20 -86.40 -0.45 -1.59 16 18 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 19 C -0.17 -2.38 10.13 -34.86 -0.35 -2.73 16 20 C -0.16 -2.38 10.19 -34.86 -0.36 -2.73 16 21 C -0.08 -1.28 4.60 -86.41 -0.40 -1.68 16 22 H 0.09 1.42 8.12 -51.93 -0.42 1.00 16 23 C -0.11 -1.58 6.65 -22.10 -0.15 -1.73 16 24 H 0.05 1.00 7.65 -51.93 -0.40 0.60 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 28 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.33 6.74 8.09 -39.29 -0.32 6.42 16 31 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.07 1.34 8.04 -51.93 -0.42 0.93 16 33 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 286.29 15.07 4.31 4.31 Total: -1.00 -27.28 286.29 -8.90 -36.17 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.01 Total: 6.18 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -2.28 Total: -23.89 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.10 Total: -39.02 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.28 -8.90 -36.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698719183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.617 kcal (2) G-P(sol) polarization free energy of solvation -27.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds