Wall clock time and date at job start Mon Mar 30 2020 02:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47426 * 2 1 4 4 H 1.08999 * 109.46637 * 55.24753 * 3 2 1 5 5 C 1.50703 * 109.47062 * 175.24543 * 3 2 1 6 6 H 1.07999 * 119.99531 * 120.00184 * 5 3 2 7 7 C 1.37872 * 119.99900 * 299.99987 * 5 3 2 8 8 N 1.31517 * 120.00266 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99776 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47089 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47119 * 120.00331 * 9 7 5 12 12 H 1.48501 * 109.47573 * 240.00236 * 9 7 5 13 13 N 1.46901 * 109.47197 * 295.24604 * 3 2 1 14 14 C 1.46906 * 110.99763 * 153.99644 * 13 3 2 15 15 H 1.08997 * 110.51785 * 33.31152 * 14 13 3 16 16 C 1.58199 * 112.03530 * 270.69003 * 14 13 3 17 17 C 1.56202 * 102.82903 * 242.46012 * 16 14 13 18 18 H 1.08999 * 116.28551 * 162.72027 * 17 16 14 19 19 C 1.53359 * 104.07626 * 292.06024 * 17 16 14 20 20 C 1.31798 * 108.42178 * 71.22373 * 19 17 16 21 21 C 1.53357 * 108.42546 * 359.60542 * 20 19 17 22 22 H 1.08998 * 116.26059 * 159.96525 * 21 20 19 23 23 C 1.57255 * 101.22162 * 35.27881 * 17 16 14 24 24 H 1.09001 * 109.47021 * 56.33785 * 1 2 3 25 25 H 1.09000 * 109.47576 * 176.34061 * 1 2 3 26 26 H 1.09000 * 109.47154 * 296.34402 * 1 2 3 27 27 H 1.09010 * 109.46968 * 240.00334 * 2 1 3 28 28 H 1.08996 * 109.47158 * 120.00626 * 2 1 3 29 29 H 0.97002 * 119.99558 * 179.97438 * 8 7 5 30 30 H 1.00901 * 111.00184 * 277.95280 * 13 3 2 31 31 H 1.08997 * 112.09329 * 123.67208 * 16 14 13 32 32 H 1.08995 * 109.87670 * 0.21368 * 16 14 13 33 33 H 1.07993 * 125.78929 * 250.95914 * 19 17 16 34 34 H 1.08000 * 125.78502 * 179.73435 * 20 19 17 35 35 H 1.09001 * 112.52002 * 58.88967 * 23 17 16 36 36 H 1.08998 * 112.52398 * 186.74982 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6089 1.9802 0.8444 5 6 3.5425 1.4440 0.1178 6 1 4.1446 1.8897 -0.6602 7 6 4.1482 0.8765 1.2186 8 7 3.4150 0.3334 2.1657 9 14 6.0105 0.8778 1.3642 10 1 6.5995 1.5447 0.1753 11 1 6.4106 1.6116 2.5917 12 1 6.5021 -0.5214 1.4417 13 7 1.6464 2.1011 -1.2527 14 6 1.5452 3.5557 -1.0735 15 1 2.2811 3.9033 -0.3485 16 6 0.0969 3.9980 -0.6159 17 6 -0.3795 4.9012 -1.7979 18 1 -1.4509 5.0925 -1.8577 19 6 0.5281 6.1345 -1.7143 20 6 1.7422 5.7843 -2.0892 21 6 1.7297 4.2913 -2.4390 22 1 2.5435 3.9374 -3.0719 23 6 0.2758 4.1692 -3.0257 24 1 -0.3633 0.5696 -0.8554 25 1 -0.3634 -1.0255 -0.0656 26 1 -0.3633 0.4560 0.9209 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8413 -0.0662 2.9400 30 1 2.2866 1.8722 -1.9983 31 1 0.1163 4.5642 0.3153 32 1 -0.5450 3.1223 -0.5199 33 1 0.2232 7.1233 -1.4051 34 1 2.6007 6.4376 -2.1393 35 1 -0.0517 3.1337 -3.1180 36 1 0.1532 4.7234 -3.9563 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698719183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:15 Heat of formation + Delta-G solvation = 8.543053 kcal Electronic energy + Delta-G solvation = -15581.768834 eV Core-core repulsion = 13258.337612 eV Total energy + Delta-G solvation = -2323.431222 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.29956 -37.55069 -34.20664 -32.75518 -30.51575 -29.28057 -28.36983 -27.03982 -24.56003 -21.81791 -21.11487 -20.98143 -18.79910 -18.57325 -17.32029 -16.81942 -16.16411 -15.85051 -15.23877 -14.65656 -14.05778 -13.60804 -13.49908 -13.18116 -13.07821 -12.87902 -12.61341 -12.39446 -12.19013 -12.15435 -12.11204 -11.94669 -11.59045 -11.49330 -11.37318 -11.10260 -10.91353 -10.46905 -9.76981 -8.99544 -8.06139 -6.28726 1.34647 1.37221 1.39377 1.47297 2.38291 3.12806 3.53194 3.72165 3.78917 3.95600 4.23950 4.41459 4.50233 4.57526 4.62780 4.68385 4.77848 4.81158 4.94055 5.02690 5.10477 5.18684 5.20235 5.24721 5.33958 5.41093 5.44998 5.52709 5.56818 5.67421 5.79605 6.10941 6.15106 6.21835 6.42191 6.85838 7.04178 7.42920 8.90028 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.030104 B = 0.008884 C = 0.007499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.887429 B = 3151.042029 C = 3732.891838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.225 3.775 4 H -0.006 1.006 5 C -0.557 4.557 6 H 0.048 0.952 7 C 0.018 3.982 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.666 5.666 14 C 0.093 3.907 15 H 0.007 0.993 16 C -0.107 4.107 17 C -0.072 4.072 18 H 0.116 0.884 19 C -0.163 4.163 20 C -0.179 4.179 21 C -0.083 4.083 22 H 0.093 0.907 23 C -0.103 4.103 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.058 0.942 29 H 0.261 0.739 30 H 0.329 0.671 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.075 0.925 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 8.060 -8.343 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.117 3.883 4 H 0.012 0.988 5 C -0.597 4.597 6 H 0.066 0.934 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.204 1.204 13 N -0.295 5.295 14 C -0.018 4.018 15 H 0.025 0.975 16 C -0.145 4.145 17 C -0.090 4.090 18 H 0.134 0.866 19 C -0.181 4.181 20 C -0.197 4.197 21 C -0.102 4.102 22 H 0.111 0.889 23 C -0.140 4.140 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.161 0.839 34 H 0.149 0.851 35 H 0.093 0.907 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.607 7.841 -8.056 13.040 hybrid contribution 2.312 0.058 0.840 2.461 sum -4.295 7.900 -7.216 11.529 Atomic orbital electron populations 1.21566 0.96372 0.99879 1.00393 1.21350 0.94462 0.98343 0.99929 1.18892 0.91300 0.91427 0.86730 0.98807 1.22215 0.94194 1.37686 1.05573 0.93409 1.25674 1.02117 0.94855 0.95510 1.70021 1.36296 1.38840 1.09872 0.85641 0.81124 0.77828 0.77831 1.19500 1.20887 1.20352 1.60708 1.53999 1.06744 1.08028 1.23071 0.95446 0.88120 0.95128 0.97504 1.23211 0.95897 0.98436 0.96996 1.22952 0.98934 0.92644 0.94516 0.86557 1.24312 0.95500 0.98633 0.99660 1.24158 0.98243 0.95602 1.01732 1.23042 0.98652 0.93150 0.95319 0.88914 1.23924 0.92513 1.00641 0.96915 0.92061 0.93609 0.95360 0.95274 0.92304 0.92932 0.85384 0.93154 0.91772 0.83909 0.85063 0.90652 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 9.84 71.98 0.71 -4.38 16 2 C -0.10 -4.98 5.45 30.59 0.17 -4.81 16 3 C 0.23 11.43 1.86 44.17 0.08 11.51 16 4 H -0.01 -0.35 7.84 -2.39 -0.02 -0.37 16 5 C -0.56 -30.80 8.35 25.60 0.21 -30.59 16 6 H 0.05 2.63 7.73 -2.91 -0.02 2.60 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -52.95 11.29 21.45 0.24 -52.70 16 9 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 N -0.67 -27.85 5.44 -458.29 -2.50 -30.35 16 14 C 0.09 3.56 2.42 47.88 0.12 3.67 16 15 H 0.01 0.32 7.70 -2.39 -0.02 0.30 16 16 C -0.11 -3.60 6.29 33.56 0.21 -3.39 16 17 C -0.07 -1.86 5.20 -8.06 -0.04 -1.90 16 18 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 19 C -0.16 -4.03 10.13 25.79 0.26 -3.77 16 20 C -0.18 -4.87 10.19 25.79 0.26 -4.61 16 21 C -0.08 -2.52 4.60 -8.06 -0.04 -2.56 16 22 H 0.09 2.78 8.12 -2.39 -0.02 2.76 16 23 C -0.10 -2.67 6.65 33.59 0.22 -2.45 16 24 H 0.06 2.35 7.65 -2.39 -0.02 2.33 16 25 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.06 3.24 5.96 -2.39 -0.01 3.23 16 29 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.33 13.62 8.09 -89.69 -0.73 12.90 16 31 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 32 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16 33 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.07 2.10 8.08 -2.39 -0.02 2.08 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -59.30 286.29 2.70 -56.60 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.31 Total: 22.13 kcal Atomic # 6 Polarization: -44.43 SS G_CDS: 2.61 Total: -41.81 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -2.25 Total: -83.05 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -59.30 2.70 -56.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698719183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.144 kcal (2) G-P(sol) polarization free energy of solvation -59.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds