Wall clock time and date at job start Mon Mar 30 2020 02:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30504 * 1 3 3 Si 1.86803 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00002 * 3 2 1 5 5 H 1.48501 * 109.47062 * 29.99953 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99752 * 3 2 1 7 7 C 1.40422 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.41708 * 119.99849 * 0.27960 * 7 2 1 10 10 O 1.21743 * 120.00008 * 359.72130 * 9 7 2 11 11 C 1.48061 * 120.00155 * 179.72209 * 9 7 2 12 12 C 1.39528 * 119.73840 * 179.72417 * 11 9 7 13 13 C 1.38498 * 119.05248 * 179.75011 * 12 11 9 14 14 N 1.48025 * 120.74977 * 180.23979 * 13 12 11 15 15 O 1.21795 * 120.00049 * 180.28304 * 14 13 12 16 16 O 1.21802 * 119.99706 * 0.27975 * 14 13 12 17 17 C 1.38697 * 118.50433 * 0.51552 * 13 12 11 18 18 C 1.38617 * 119.37345 * 359.75036 * 17 13 12 19 19 N 1.31529 * 120.91233 * 359.97438 * 18 17 13 20 20 H 0.97000 * 119.99420 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.47487 * 0.02562 * 12 11 9 22 22 H 1.07995 * 120.31781 * 179.76918 * 17 13 12 23 23 H 1.07993 * 119.54499 * 180.02562 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 2.4866 2.0464 -1.4001 5 1 1.4365 2.6527 0.7000 6 1 3.5366 1.4401 0.7001 7 6 2.0072 -1.2161 0.0005 8 1 3.0872 -1.2160 0.0001 9 6 1.2986 -2.4433 -0.0049 10 8 0.0812 -2.4433 -0.0049 11 6 2.0389 -3.7256 -0.0105 12 6 1.3357 -4.9307 -0.0101 13 6 2.0424 -6.1217 -0.0207 14 7 1.3346 -7.4218 -0.0259 15 8 1.9697 -8.4610 -0.0300 16 8 0.1169 -7.4521 -0.0259 17 6 3.4284 -6.0690 -0.0204 18 6 4.0619 -4.8361 -0.0150 19 7 3.3670 -3.7194 -0.0105 20 1 -0.4849 0.8401 -0.0004 21 1 0.2557 -4.9347 -0.0060 22 1 4.0086 -6.9799 -0.0248 23 1 5.1409 -4.7918 -0.0152 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709683722.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:45 Heat of formation + Delta-G solvation = -28.897201 kcal Electronic energy + Delta-G solvation = -14120.925406 eV Core-core repulsion = 11322.945458 eV Total energy + Delta-G solvation = -2797.979948 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.047 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.49214 -41.38723 -38.66192 -37.86721 -34.97186 -34.46178 -32.59778 -29.31945 -28.32740 -25.55752 -24.21645 -22.39263 -20.41126 -20.04810 -18.86557 -18.59062 -17.58938 -17.20729 -17.05909 -16.00511 -15.55850 -15.29243 -14.90660 -13.96108 -13.57424 -13.31620 -12.90515 -12.77942 -12.65895 -12.51460 -12.45728 -12.05747 -11.71167 -11.07623 -11.07112 -10.43661 -9.85812 -8.50550 -7.21412 -1.42935 -0.50825 0.05685 0.18555 1.34325 1.39176 1.57373 1.90526 2.18088 2.53693 3.04891 3.23131 3.29474 3.48557 3.66239 4.04342 4.25330 4.42743 4.51889 4.94622 5.10166 5.25531 5.95498 6.34381 6.46344 6.55659 6.67769 8.01867 8.32719 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.053466 B = 0.007170 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.566814 B = 3904.196047 C = 4417.914253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.017 3.983 3 Si 1.003 2.997 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.245 1.245 7 C -0.498 4.498 8 H 0.104 0.896 9 C 0.356 3.644 10 O -0.588 6.588 11 C 0.098 3.902 12 C -0.106 4.106 13 C -0.016 4.016 14 N 0.028 4.972 15 O -0.105 6.105 16 O -0.213 6.213 17 C -0.093 4.093 18 C 0.118 3.882 19 N -0.433 5.433 20 H 0.288 0.712 21 H 0.140 0.860 22 H 0.207 0.793 23 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.305 -6.047 -0.028 12.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.203 4.203 3 Si 0.821 3.179 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.168 1.168 7 C -0.528 4.528 8 H 0.122 0.878 9 C 0.256 3.744 10 O -0.481 6.481 11 C -0.037 4.037 12 C -0.128 4.128 13 C -0.105 4.105 14 N 0.548 4.452 15 O -0.337 6.337 16 O -0.414 6.414 17 C -0.114 4.114 18 C -0.043 4.043 19 N -0.145 5.145 20 H 0.099 0.901 21 H 0.157 0.843 22 H 0.224 0.776 23 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 11.142 -4.519 -0.017 12.023 hybrid contribution -1.015 -0.674 -0.018 1.218 sum 10.127 -5.192 -0.035 11.380 Atomic orbital electron populations 1.70065 1.10101 1.30656 1.29400 1.27442 0.95592 1.05918 0.91377 0.84924 0.79048 0.73961 0.80002 1.18082 1.19094 1.16757 1.21482 0.96760 0.91185 1.43390 0.87831 1.18580 0.87955 0.86822 0.81046 1.90513 1.16268 1.88286 1.53036 1.23132 0.90286 0.95829 0.94484 1.22006 1.03175 0.90863 0.96790 1.21632 0.94387 0.82405 1.12107 1.43728 1.01188 1.02932 0.97311 1.94436 1.67607 1.21900 1.49794 1.94618 0.95978 1.94306 1.56499 1.22811 0.89923 1.04048 0.94620 1.24146 1.03283 0.84422 0.92466 1.67882 1.06988 1.32754 1.06904 0.90117 0.84252 0.77560 0.74859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.84 11.73 21.90 0.26 -43.58 14 2 C 0.02 0.88 5.50 85.42 0.47 1.36 14 3 Si 1.00 37.22 29.56 68.60 2.03 39.24 14 4 H -0.26 -9.04 7.11 99.48 0.71 -8.34 14 5 H -0.27 -9.43 7.11 99.48 0.71 -8.72 14 6 H -0.24 -8.46 7.11 99.48 0.71 -7.76 14 7 C -0.50 -26.83 9.01 23.66 0.21 -26.62 14 8 H 0.10 5.09 7.36 -2.91 -0.02 5.07 14 9 C 0.36 20.20 6.92 25.74 0.18 20.38 14 10 O -0.59 -38.04 14.87 -4.49 -0.07 -38.11 14 11 C 0.10 4.49 6.73 41.91 0.28 4.77 14 12 C -0.11 -4.49 9.16 22.64 0.21 -4.28 14 13 C -0.02 -0.53 6.90 36.55 0.25 -0.28 14 14 N 0.03 0.94 4.45 -46.05 -0.21 0.73 14 15 O -0.11 -3.14 18.54 18.89 0.35 -2.79 14 16 O -0.21 -8.27 18.54 18.88 0.35 -7.92 14 17 C -0.09 -2.17 9.64 22.47 0.22 -1.95 14 18 C 0.12 2.82 11.18 84.83 0.95 3.76 14 19 N -0.43 -16.06 9.44 -184.74 -1.74 -17.81 14 20 H 0.29 14.45 8.29 -92.71 -0.77 13.68 14 21 H 0.14 6.52 7.29 -2.91 -0.02 6.50 14 22 H 0.21 2.84 7.70 -2.91 -0.02 2.82 14 23 H 0.24 2.78 8.06 -2.91 -0.02 2.75 14 Total: -1.00 -72.09 232.20 5.00 -67.09 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.26 Total: 6.01 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 2.77 Total: -2.86 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -1.69 Total: -60.65 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: 0.63 Total: -48.83 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.24 kcal Total: -72.09 5.00 -67.09 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709683722.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.191 kcal (2) G-P(sol) polarization free energy of solvation -72.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds