Wall clock time and date at job start Mon Mar 30 2020 03:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99545 * 2 1 4 4 H 1.48503 * 109.47024 * 269.99831 * 3 2 1 5 5 H 1.48495 * 109.47380 * 29.99977 * 3 2 1 6 6 H 1.48502 * 109.46830 * 149.99860 * 3 2 1 7 7 C 1.37875 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99962 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00143 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47411 * 300.00111 * 9 7 2 11 11 N 1.46903 * 109.46842 * 60.00361 * 9 7 2 12 12 C 1.50693 * 109.47212 * 179.97438 * 9 7 2 13 13 C 1.34342 * 125.44917 * 275.02959 * 12 9 7 14 14 C 1.41851 * 107.76807 * 179.97438 * 13 12 9 15 15 S 1.75943 * 142.80247 * 180.02562 * 14 13 12 16 16 C 1.75615 * 91.30016 * 179.97438 * 15 14 13 17 17 C 1.32564 * 110.39371 * 359.97438 * 16 15 14 18 18 C 1.37536 * 107.56150 * 359.75633 * 14 13 12 19 19 N 1.36578 * 125.44754 * 95.00585 * 12 9 7 20 20 H 0.97001 * 125.62418 * 359.97438 * 19 12 9 21 21 H 0.96998 * 120.00611 * 359.97438 * 1 2 3 22 22 H 1.00898 * 111.00203 * 59.99711 * 11 9 7 23 23 H 1.00907 * 111.00047 * 183.95537 * 11 9 7 24 24 H 1.08002 * 126.11907 * 359.97438 * 13 12 9 25 25 H 1.08000 * 124.79925 * 180.02562 * 16 15 14 26 26 H 1.08008 * 122.19938 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.6248 -2.5563 0.8919 11 7 0.4062 -2.5777 -1.1974 12 6 2.2304 -3.6445 0.0015 13 6 2.8088 -4.1748 -1.0889 14 6 3.6592 -5.2260 -0.6599 15 16 4.7763 -6.4526 -1.2457 16 6 5.0743 -7.0193 0.3896 17 6 4.3688 -6.3105 1.2599 18 6 3.5712 -5.2977 0.7108 19 7 2.6722 -4.3091 1.1098 20 1 2.4079 -4.1214 2.0240 21 1 -0.4851 0.8400 0.0004 22 1 0.9639 -2.5268 -2.0368 23 1 -0.1578 -3.4144 -1.1882 24 1 2.6541 -3.8576 -2.1097 25 1 5.7391 -7.8298 0.6495 26 1 4.4092 -6.4988 2.3227 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713782358.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:07 Heat of formation + Delta-G solvation = 48.124877 kcal Electronic energy + Delta-G solvation = -12511.319889 eV Core-core repulsion = 10295.265835 eV Total energy + Delta-G solvation = -2216.054054 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.05960 -37.11403 -35.41912 -33.42115 -31.58110 -28.88305 -27.57759 -24.30180 -23.65244 -21.24268 -20.41560 -18.85126 -18.50858 -16.63619 -16.22604 -16.12411 -15.46968 -15.31272 -14.94439 -14.66125 -14.18280 -13.62015 -13.13758 -12.78177 -12.69130 -12.61666 -12.37716 -11.88223 -11.69618 -11.26796 -10.59341 -10.47789 -9.16255 -8.78034 -8.45137 -8.01717 -6.25045 0.24955 0.74226 1.27533 1.42805 1.44420 1.53071 1.80283 1.95097 2.28213 2.47573 3.21741 4.07558 4.20414 4.26462 4.41192 4.65022 4.80219 4.94149 5.02467 5.19004 5.45879 5.71690 5.78934 6.03634 6.11922 6.59132 6.71523 7.01021 7.18283 7.47954 9.00312 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.047918 B = 0.007136 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.190233 B = 3922.657414 C = 4018.670398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.041 3.959 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.042 0.958 9 C 0.286 3.714 10 H 0.022 0.978 11 N -0.807 5.807 12 C 0.078 3.922 13 C -0.201 4.201 14 C -0.230 4.230 15 S 0.108 5.892 16 C -0.194 4.194 17 C -0.114 4.114 18 C 0.005 3.995 19 N -0.552 5.552 20 H 0.421 0.579 21 H 0.258 0.742 22 H 0.327 0.673 23 H 0.315 0.685 24 H 0.132 0.868 25 H 0.206 0.794 26 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.902 -12.186 1.366 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.164 4.164 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.061 0.939 9 C 0.175 3.825 10 H 0.040 0.960 11 N -0.334 5.334 12 C -0.040 4.040 13 C -0.230 4.230 14 C -0.351 4.351 15 S 0.366 5.634 16 C -0.329 4.329 17 C -0.147 4.147 18 C -0.110 4.110 19 N -0.153 5.153 20 H 0.259 0.741 21 H 0.067 0.933 22 H 0.140 0.860 23 H 0.126 0.874 24 H 0.150 0.850 25 H 0.223 0.777 26 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.863 -11.809 0.396 14.192 hybrid contribution 0.069 0.776 1.481 1.673 sum 7.931 -11.032 1.877 13.716 Atomic orbital electron populations 1.70199 1.06875 1.26696 1.47286 1.25608 0.95426 1.01616 0.93706 0.85724 0.78629 0.79958 0.78162 1.20285 1.20649 1.19939 1.21004 0.91916 0.90730 1.54750 0.93923 1.17528 0.86637 0.87430 0.90954 0.96037 1.59117 1.27419 1.42866 1.03973 1.22430 1.00081 0.96017 0.85476 1.19742 1.04381 1.00546 0.98315 1.23086 1.08672 1.06123 0.97191 1.83441 1.42644 1.28903 1.08399 1.25434 1.06787 1.06423 0.94229 1.19149 0.98308 0.95060 1.02137 1.18866 1.01299 0.98057 0.92791 1.42021 1.36590 1.27708 1.09023 0.74124 0.93265 0.86015 0.87407 0.84969 0.77739 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.94 12.77 21.45 0.27 -49.66 15 2 C 0.04 2.24 5.39 84.65 0.46 2.70 15 3 Si 0.95 43.37 29.54 68.60 2.03 45.40 15 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 7 C -0.55 -29.68 8.71 25.60 0.22 -29.46 15 8 H 0.04 2.38 7.74 -2.91 -0.02 2.36 15 9 C 0.29 14.01 3.13 43.42 0.14 14.15 15 10 H 0.02 1.15 8.14 -2.39 -0.02 1.13 15 11 N -0.81 -37.49 8.38 -174.96 -1.47 -38.95 15 12 C 0.08 3.36 6.10 40.93 0.25 3.61 15 13 C -0.20 -8.34 10.13 22.27 0.23 -8.11 15 14 C -0.23 -8.57 7.32 23.00 0.17 -8.40 15 15 S 0.11 3.03 23.31 -56.49 -1.32 1.72 15 16 C -0.19 -4.42 11.13 66.67 0.74 -3.68 15 17 C -0.11 -3.01 10.17 21.58 0.22 -2.79 15 18 C 0.00 0.16 7.71 38.22 0.29 0.45 15 19 N -0.55 -20.71 6.21 -176.31 -1.09 -21.80 15 20 H 0.42 13.75 8.96 -92.71 -0.83 12.92 15 21 H 0.26 14.07 8.31 -92.71 -0.77 13.30 15 22 H 0.33 14.65 7.96 -89.70 -0.71 13.94 15 23 H 0.31 13.05 9.06 -89.69 -0.81 12.24 15 24 H 0.13 5.32 7.40 -2.91 -0.02 5.29 15 25 H 0.21 2.88 8.06 -2.91 -0.02 2.85 15 26 H 0.16 3.22 8.06 -2.91 -0.02 3.20 15 Total: -1.00 -62.88 245.01 0.02 -62.86 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -1.12 Total: 31.98 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 2.71 Total: -31.54 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -2.29 Total: -110.42 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.32 Total: 1.72 kcal Total: -62.88 0.02 -62.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713782358.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.989 kcal (2) G-P(sol) polarization free energy of solvation -62.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds