Wall clock time and date at job start Mon Mar 30 2020 03:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48504 * 109.47269 * 270.00129 * 3 2 1 5 5 H 1.48504 * 109.47187 * 30.00313 * 3 2 1 6 6 H 1.48505 * 109.47330 * 150.00271 * 3 2 1 7 7 C 1.37883 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99751 * 178.31317 * 7 2 1 9 9 C 1.50699 * 119.99941 * 358.30970 * 7 2 1 10 10 C 1.50700 * 115.54594 * 84.19993 * 9 7 2 11 11 C 1.38238 * 119.98756 * 40.50726 * 10 9 7 12 12 C 1.38210 * 120.01152 * 179.97438 * 11 10 9 13 13 C 1.38351 * 119.98930 * 359.97438 * 12 11 10 14 14 Cl 1.73608 * 120.01418 * 180.02562 * 13 12 11 15 15 C 1.38352 * 119.97445 * 0.02562 * 13 12 11 16 16 C 1.38212 * 119.98331 * 359.97438 * 15 13 12 17 17 C 1.52998 * 117.51751 * 229.90148 * 9 7 2 18 18 C 1.52996 * 117.49933 * 298.53109 * 9 7 2 19 19 H 0.96996 * 120.00221 * 355.00642 * 1 2 3 20 20 H 1.07995 * 119.99587 * 359.69270 * 11 10 9 21 21 H 1.08009 * 120.00459 * 179.97438 * 12 11 10 22 22 H 1.07999 * 120.00861 * 179.97438 * 15 13 12 23 23 H 1.08005 * 119.99563 * 180.02562 * 16 15 13 24 24 H 1.09002 * 117.49370 * 214.96855 * 17 9 7 25 25 H 1.08998 * 117.50193 * 359.97438 * 17 9 7 26 26 H 1.09005 * 117.49774 * 359.97438 * 18 9 7 27 27 H 1.09007 * 117.50024 * 144.99414 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0842 -1.1942 -0.0281 9 6 1.2516 -2.4989 0.0374 10 6 0.7733 -3.0123 -1.2964 11 6 1.5880 -2.9102 -2.4085 12 6 1.1502 -3.3813 -3.6318 13 6 -0.1036 -3.9556 -3.7431 14 17 -0.6540 -4.5482 -5.2793 15 6 -0.9186 -4.0574 -2.6298 16 6 -0.4796 -3.5860 -1.4070 17 6 1.6816 -3.5332 1.0796 18 6 0.3678 -2.7694 1.2566 19 1 -0.4850 0.8368 0.0731 20 1 2.5651 -2.4582 -2.3223 21 1 1.7867 -3.3012 -4.5007 22 1 -1.8976 -4.5052 -2.7162 23 1 -1.1155 -3.6657 -0.5376 24 1 1.6185 -4.5850 0.8005 25 1 2.5096 -3.2702 1.7378 26 1 0.3313 -2.0037 2.0316 27 1 -0.5596 -3.3187 1.0942 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714049483.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:15 Heat of formation + Delta-G solvation = 34.034108 kcal Electronic energy + Delta-G solvation = -12624.858717 eV Core-core repulsion = 10373.857184 eV Total energy + Delta-G solvation = -2251.001533 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.85291 -36.45793 -35.44035 -32.05220 -30.35010 -29.42975 -25.72311 -22.43267 -22.16982 -20.89795 -19.24482 -16.83088 -16.13357 -14.68296 -14.48438 -14.33105 -13.88675 -13.12753 -12.80642 -12.77354 -12.06256 -11.33240 -11.18390 -11.02777 -10.95360 -10.86482 -10.49841 -10.36206 -10.11375 -9.61367 -9.20632 -8.58355 -8.45901 -8.31411 -7.48600 -6.10386 -4.20410 1.94554 2.04015 2.63865 3.24848 3.32663 3.34675 4.33357 4.40006 5.17103 5.31763 5.47976 5.53077 5.81314 6.05811 6.15375 6.25805 6.43588 6.48740 6.64066 6.65067 6.78808 6.88098 7.05403 7.30089 7.38112 7.54737 7.71845 7.80334 8.31392 8.81680 9.47059 10.97298 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.032806 B = 0.008726 C = 0.007719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.293235 B = 3208.172725 C = 3626.758573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.497 4.497 8 H 0.063 0.937 9 C 0.063 3.937 10 C 0.013 3.987 11 C -0.092 4.092 12 C -0.119 4.119 13 C -0.059 4.059 14 Cl -0.102 7.102 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.198 4.198 18 C -0.154 4.154 19 H 0.261 0.739 20 H 0.131 0.869 21 H 0.120 0.880 22 H 0.119 0.881 23 H 0.125 0.875 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 -6.362 -4.113 7.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.535 4.535 8 H 0.081 0.919 9 C 0.062 3.938 10 C 0.012 3.988 11 C -0.110 4.110 12 C -0.138 4.138 13 C -0.085 4.085 14 Cl -0.073 7.073 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.235 4.235 18 C -0.191 4.191 19 H 0.071 0.929 20 H 0.149 0.851 21 H 0.138 0.862 22 H 0.137 0.863 23 H 0.143 0.857 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.474 -6.280 -4.310 7.631 hybrid contribution 0.185 1.006 -0.176 1.038 sum -0.289 -5.273 -4.486 6.929 Atomic orbital electron populations 1.70002 1.05883 1.26934 1.47818 1.24985 0.94822 0.98973 0.94204 0.86638 0.79967 0.83391 0.78292 1.20489 1.21129 1.19761 1.20340 0.92324 0.88122 1.52695 0.91925 1.17736 0.98651 0.93556 0.83836 1.19963 0.92089 0.90232 0.96481 1.20971 1.00783 0.98339 0.90945 1.20932 0.94467 0.99981 0.98388 1.20688 0.96404 1.05588 0.85859 1.98301 1.90116 1.87633 1.31299 1.20862 0.99098 1.01741 0.91803 1.21096 0.96783 0.98894 0.96543 1.23029 0.99413 0.95521 1.05538 1.22615 0.91744 1.01435 1.03278 0.92877 0.85139 0.86169 0.86289 0.85709 0.91446 0.89964 0.89674 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.99 12.83 55.43 0.71 -23.28 15 2 C 0.07 1.97 5.42 -17.82 -0.10 1.88 15 3 Si 0.89 20.47 29.54 -169.99 -5.02 15.44 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.50 -12.88 8.03 -34.44 -0.28 -13.16 15 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 15 9 C 0.06 1.48 1.76 -156.82 -0.28 1.20 15 10 C 0.01 0.29 5.39 -104.62 -0.56 -0.28 15 11 C -0.09 -1.90 9.34 -39.59 -0.37 -2.27 15 12 C -0.12 -2.18 9.83 -39.55 -0.39 -2.57 15 13 C -0.06 -1.06 6.32 -39.50 -0.25 -1.31 15 14 Cl -0.10 -1.58 28.96 -51.86 -1.50 -3.08 15 15 C -0.12 -2.12 9.83 -39.55 -0.39 -2.50 15 16 C -0.12 -2.33 9.38 -39.59 -0.37 -2.70 15 17 C -0.20 -4.11 9.94 -26.73 -0.27 -4.37 15 18 C -0.15 -3.42 8.99 -26.73 -0.24 -3.66 15 19 H 0.26 6.94 8.32 -40.82 -0.34 6.60 15 20 H 0.13 2.64 7.66 -52.49 -0.40 2.24 15 21 H 0.12 1.91 8.06 -52.48 -0.42 1.48 15 22 H 0.12 1.87 8.06 -52.49 -0.42 1.45 15 23 H 0.13 2.43 5.97 -52.48 -0.31 2.12 15 24 H 0.07 1.28 8.14 -51.93 -0.42 0.85 15 25 H 0.08 1.67 8.14 -51.93 -0.42 1.25 15 26 H 0.08 2.03 8.14 -51.93 -0.42 1.60 15 27 H 0.07 1.40 6.13 -51.92 -0.32 1.08 15 LS Contribution 253.31 15.07 3.82 3.82 Total: -1.00 -26.77 253.31 -8.17 -34.94 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -2.69 Total: 1.90 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: -3.49 Total: -29.74 kcal Atomic # 7 Polarization: -23.99 SS G_CDS: 0.71 Total: -23.28 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -1.50 Total: -3.08 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.77 -8.17 -34.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714049483.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.976 kcal (2) G-P(sol) polarization free energy of solvation -26.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds