Wall clock time and date at job start Mon Mar 30 2020 03:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00311 * 2 1 4 4 H 1.48499 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46666 * 299.99589 * 3 2 1 6 6 H 1.48497 * 109.47155 * 59.99772 * 3 2 1 7 7 C 1.37877 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00577 * 187.43586 * 7 2 1 9 9 C 1.50704 * 120.00045 * 7.43614 * 7 2 1 10 10 C 1.50702 * 115.54939 * 277.41409 * 9 7 2 11 11 C 1.38258 * 119.99344 * 316.56726 * 10 9 7 12 12 C 1.38215 * 120.02879 * 179.97438 * 11 10 9 13 13 C 1.38237 * 120.01173 * 0.02562 * 12 11 10 14 14 C 1.38336 * 119.98594 * 0.02562 * 13 12 11 15 15 Cl 1.73606 * 120.01099 * 180.02562 * 14 13 12 16 16 C 1.38199 * 119.99094 * 136.29314 * 10 9 7 17 17 C 1.52998 * 117.49993 * 131.73925 * 9 7 2 18 18 C 1.53005 * 117.49385 * 63.07810 * 9 7 2 19 19 H 0.97008 * 119.99823 * 354.96329 * 1 2 3 20 20 H 1.08004 * 119.98359 * 359.97438 * 11 10 9 21 21 H 1.08003 * 119.99879 * 180.02562 * 12 11 10 22 22 H 1.08002 * 120.00886 * 180.02562 * 13 12 11 23 23 H 1.07994 * 120.00635 * 0.02562 * 16 10 9 24 24 H 1.08998 * 117.49744 * 0.02562 * 17 9 7 25 25 H 1.08998 * 117.49850 * 145.02925 * 17 9 7 26 26 H 1.09002 * 117.49647 * 214.98120 * 18 9 7 27 27 H 1.08998 * 117.50379 * 359.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0776 -1.1980 0.1216 9 6 1.2605 -2.4938 -0.1678 10 6 0.6372 -3.0529 1.0852 11 6 1.3473 -3.0490 2.2715 12 6 0.7762 -3.5611 3.4212 13 6 -0.5054 -4.0781 3.3855 14 6 -1.2161 -4.0832 2.1986 15 17 -2.8258 -4.7316 2.1532 16 6 -0.6463 -3.5642 1.0495 17 6 1.8043 -3.4916 -1.1922 18 6 0.5174 -2.7167 -1.4866 19 1 -0.4850 0.8369 0.0738 20 1 2.3488 -2.6456 2.2997 21 1 1.3312 -3.5575 4.3477 22 1 -0.9518 -4.4778 4.2840 23 1 -1.2023 -3.5635 0.1237 24 1 2.7005 -3.2081 -1.7441 25 1 1.7109 -4.5525 -0.9601 26 1 -0.4220 -3.2681 -1.4480 27 1 0.5663 -1.9231 -2.2322 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714049796.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:39 Heat of formation + Delta-G solvation = 34.512028 kcal Electronic energy + Delta-G solvation = -12689.046312 eV Core-core repulsion = 10438.065503 eV Total energy + Delta-G solvation = -2250.980809 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.82799 -36.34035 -35.51884 -32.05911 -29.98361 -29.70460 -25.70809 -22.56857 -22.03150 -20.85435 -19.28145 -16.84828 -15.90432 -14.64911 -14.50392 -14.43667 -13.86324 -13.12049 -13.02827 -12.70936 -11.92355 -11.23014 -11.10486 -11.04261 -10.90939 -10.73067 -10.57728 -10.39061 -10.14963 -9.62167 -9.23230 -8.61908 -8.46185 -8.07077 -7.58257 -6.09575 -4.18917 1.95596 2.08883 2.68477 3.23987 3.33071 3.35803 4.33427 4.42503 5.15396 5.33205 5.51008 5.52515 5.87296 6.06179 6.15005 6.27221 6.37076 6.52743 6.60338 6.64993 6.88483 6.93767 7.06974 7.27052 7.35728 7.56828 7.72995 7.81121 8.31742 8.82418 9.47601 10.97568 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.009058 C = 0.008745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.480302 B = 3090.400147 C = 3201.179795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.499 4.499 8 H 0.064 0.936 9 C 0.067 3.933 10 C 0.020 3.980 11 C -0.099 4.099 12 C -0.119 4.119 13 C -0.142 4.142 14 C -0.036 4.036 15 Cl -0.099 7.099 16 C -0.112 4.112 17 C -0.197 4.197 18 C -0.160 4.160 19 H 0.261 0.739 20 H 0.126 0.874 21 H 0.119 0.881 22 H 0.118 0.882 23 H 0.126 0.874 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.725 -6.485 3.623 7.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.536 4.536 8 H 0.082 0.918 9 C 0.066 3.934 10 C 0.020 3.980 11 C -0.117 4.117 12 C -0.138 4.138 13 C -0.161 4.161 14 C -0.062 4.062 15 Cl -0.071 7.071 16 C -0.130 4.130 17 C -0.234 4.234 18 C -0.197 4.197 19 H 0.071 0.929 20 H 0.144 0.856 21 H 0.137 0.863 22 H 0.136 0.864 23 H 0.144 0.856 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.042 -6.410 3.549 7.401 hybrid contribution 0.055 1.009 0.080 1.014 sum -0.987 -5.401 3.629 6.582 Atomic orbital electron populations 1.70004 1.05907 1.26838 1.47581 1.25003 0.94803 0.99003 0.94156 0.86567 0.80275 0.83704 0.77708 1.19577 1.20862 1.20967 1.20351 0.93051 0.88111 1.52135 0.91793 1.17723 0.97714 0.93695 0.84226 1.19793 0.91671 0.90315 0.96264 1.21086 1.00778 0.98023 0.91798 1.20971 0.94681 0.99741 0.98358 1.20725 0.95388 1.03878 0.96099 1.20842 0.85945 1.03307 0.96079 1.98306 1.24468 1.85412 1.98887 1.21010 0.96025 0.99065 0.96940 1.23028 0.98219 0.95600 1.06576 1.22676 0.92992 1.01438 1.02626 0.92877 0.85568 0.86296 0.86412 0.85634 0.89918 0.91390 0.91354 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.06 13.07 55.43 0.72 -23.34 15 2 C 0.08 2.00 5.40 -17.82 -0.10 1.90 15 3 Si 0.89 20.48 29.55 -169.99 -5.02 15.46 15 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 7 C -0.50 -12.98 8.13 -34.44 -0.28 -13.26 15 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 15 9 C 0.07 1.59 1.67 -156.81 -0.26 1.33 15 10 C 0.02 0.46 5.36 -104.63 -0.56 -0.10 15 11 C -0.10 -2.02 9.35 -39.58 -0.37 -2.39 15 12 C -0.12 -2.10 10.05 -39.59 -0.40 -2.50 15 13 C -0.14 -2.48 9.83 -39.55 -0.39 -2.87 15 14 C -0.04 -0.67 6.32 -39.50 -0.25 -0.92 15 15 Cl -0.10 -1.66 28.96 -51.86 -1.50 -3.16 15 16 C -0.11 -2.37 9.16 -39.55 -0.36 -2.73 15 17 C -0.20 -4.13 9.94 -26.69 -0.27 -4.40 15 18 C -0.16 -3.62 9.23 -26.69 -0.25 -3.87 15 19 H 0.26 6.97 8.32 -40.82 -0.34 6.63 15 20 H 0.13 2.53 7.76 -52.48 -0.41 2.12 15 21 H 0.12 1.70 8.06 -52.48 -0.42 1.28 15 22 H 0.12 1.74 8.06 -52.49 -0.42 1.32 15 23 H 0.13 2.67 6.04 -52.49 -0.32 2.35 15 24 H 0.08 1.68 8.14 -51.93 -0.42 1.26 15 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 26 H 0.07 1.46 6.19 -51.93 -0.32 1.14 15 27 H 0.08 2.01 8.14 -51.93 -0.42 1.58 15 LS Contribution 254.00 15.07 3.83 3.83 Total: -1.00 -27.06 254.00 -8.16 -35.21 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -2.71 Total: 1.81 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: -3.48 Total: -29.82 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.72 Total: -23.34 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -1.50 Total: -3.16 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.06 -8.16 -35.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714049796.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.726 kcal (2) G-P(sol) polarization free energy of solvation -27.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds