Wall clock time and date at job start Mon Mar 30 2020 03:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00311 * 2 1 4 4 H 1.48499 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46666 * 299.99589 * 3 2 1 6 6 H 1.48497 * 109.47155 * 59.99772 * 3 2 1 7 7 C 1.37877 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00577 * 187.43586 * 7 2 1 9 9 C 1.50704 * 120.00045 * 7.43614 * 7 2 1 10 10 C 1.50702 * 115.54939 * 277.41409 * 9 7 2 11 11 C 1.38258 * 119.99344 * 316.56726 * 10 9 7 12 12 C 1.38215 * 120.02879 * 179.97438 * 11 10 9 13 13 C 1.38237 * 120.01173 * 0.02562 * 12 11 10 14 14 C 1.38336 * 119.98594 * 0.02562 * 13 12 11 15 15 Cl 1.73606 * 120.01099 * 180.02562 * 14 13 12 16 16 C 1.38199 * 119.99094 * 136.29314 * 10 9 7 17 17 C 1.52998 * 117.49993 * 131.73925 * 9 7 2 18 18 C 1.53005 * 117.49385 * 63.07810 * 9 7 2 19 19 H 0.97008 * 119.99823 * 354.96329 * 1 2 3 20 20 H 1.08004 * 119.98359 * 359.97438 * 11 10 9 21 21 H 1.08003 * 119.99879 * 180.02562 * 12 11 10 22 22 H 1.08002 * 120.00886 * 180.02562 * 13 12 11 23 23 H 1.07994 * 120.00635 * 0.02562 * 16 10 9 24 24 H 1.08998 * 117.49744 * 0.02562 * 17 9 7 25 25 H 1.08998 * 117.49850 * 145.02925 * 17 9 7 26 26 H 1.09002 * 117.49647 * 214.98120 * 18 9 7 27 27 H 1.08998 * 117.50379 * 359.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0776 -1.1980 0.1216 9 6 1.2605 -2.4938 -0.1678 10 6 0.6372 -3.0529 1.0852 11 6 1.3473 -3.0490 2.2715 12 6 0.7762 -3.5611 3.4212 13 6 -0.5054 -4.0781 3.3855 14 6 -1.2161 -4.0832 2.1986 15 17 -2.8258 -4.7316 2.1532 16 6 -0.6463 -3.5642 1.0495 17 6 1.8043 -3.4916 -1.1922 18 6 0.5174 -2.7167 -1.4866 19 1 -0.4850 0.8369 0.0738 20 1 2.3488 -2.6456 2.2997 21 1 1.3312 -3.5575 4.3477 22 1 -0.9518 -4.4778 4.2840 23 1 -1.2023 -3.5635 0.1237 24 1 2.7005 -3.2081 -1.7441 25 1 1.7109 -4.5525 -0.9601 26 1 -0.4220 -3.2681 -1.4480 27 1 0.5663 -1.9231 -2.2322 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714049796.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:39 Heat of formation + Delta-G solvation = 22.143586 kcal Electronic energy + Delta-G solvation = -12689.582648 eV Core-core repulsion = 10438.065503 eV Total energy + Delta-G solvation = -2251.517145 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.38151 -37.91618 -37.02411 -34.04018 -31.48267 -31.22975 -27.67059 -24.18992 -23.59751 -22.52852 -21.01038 -18.57068 -17.58368 -16.56062 -16.03557 -16.00787 -15.49677 -14.80661 -14.49147 -14.21966 -13.68830 -13.08678 -12.88946 -12.69208 -12.41404 -12.30842 -12.23619 -12.03657 -11.74414 -11.35900 -11.01186 -10.52133 -10.27512 -9.56648 -9.17787 -8.08924 -6.23088 0.44595 0.59920 1.25152 1.40865 1.44745 1.54303 2.42388 2.88768 3.18259 3.57854 4.02600 4.10769 4.32713 4.53046 4.57480 4.60511 4.76298 4.93608 4.98657 5.03787 5.23932 5.37126 5.49899 5.58540 5.64960 5.76782 6.00730 6.16640 6.40760 6.82839 7.45715 8.97440 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.009058 C = 0.008745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.480302 B = 3090.400147 C = 3201.179795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.031 3.969 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.507 4.507 8 H 0.059 0.941 9 C 0.042 3.958 10 C -0.004 4.004 11 C -0.118 4.118 12 C -0.107 4.107 13 C -0.136 4.136 14 C -0.042 4.042 15 Cl -0.080 7.080 16 C -0.130 4.130 17 C -0.176 4.176 18 C -0.166 4.166 19 H 0.259 0.741 20 H 0.122 0.878 21 H 0.158 0.842 22 H 0.152 0.848 23 H 0.114 0.886 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.461 -7.171 5.081 8.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.171 4.171 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.042 3.958 10 C -0.005 4.005 11 C -0.136 4.136 12 C -0.125 4.125 13 C -0.154 4.154 14 C -0.068 4.068 15 Cl -0.051 7.051 16 C -0.149 4.149 17 C -0.213 4.213 18 C -0.203 4.203 19 H 0.068 0.932 20 H 0.140 0.860 21 H 0.175 0.825 22 H 0.169 0.831 23 H 0.132 0.868 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.766 -7.108 5.003 8.725 hybrid contribution -0.054 1.144 -0.343 1.196 sum -0.820 -5.963 4.660 7.612 Atomic orbital electron populations 1.70121 1.07136 1.27187 1.49176 1.25654 0.95448 1.01840 0.94153 0.85659 0.79431 0.80127 0.77375 1.18823 1.21012 1.20895 1.20618 0.93020 0.89492 1.51309 0.92303 1.17845 0.98612 0.93963 0.85388 1.19736 0.92533 0.91971 0.96283 1.21207 1.00885 0.99133 0.92399 1.21354 0.94795 0.97657 0.98703 1.21144 0.95097 1.02577 0.96579 1.20977 0.86979 1.02851 0.95982 1.98309 1.22967 1.85004 1.98869 1.20948 0.95869 1.00491 0.97551 1.23037 0.97278 0.96212 1.04735 1.22567 0.94272 1.01542 1.01942 0.93222 0.85981 0.82465 0.83062 0.86801 0.89500 0.89392 0.90630 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.69 13.07 21.45 0.28 -50.41 15 2 C 0.03 1.63 5.40 84.66 0.46 2.09 15 3 Si 0.95 42.32 29.55 68.60 2.03 44.35 15 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 7 C -0.51 -26.58 8.13 25.60 0.21 -26.38 15 8 H 0.06 3.05 7.82 -2.91 -0.02 3.03 15 9 C 0.04 2.03 1.67 -53.67 -0.09 1.94 15 10 C 0.00 -0.20 5.36 -19.87 -0.11 -0.31 15 11 C -0.12 -4.71 9.35 22.27 0.21 -4.50 15 12 C -0.11 -3.45 10.05 22.26 0.22 -3.22 15 13 C -0.14 -4.29 9.83 22.29 0.22 -4.07 15 14 C -0.04 -1.50 6.32 22.32 0.14 -1.36 15 15 Cl -0.08 -2.52 28.96 -2.72 -0.08 -2.60 15 16 C -0.13 -5.46 9.16 22.29 0.20 -5.26 15 17 C -0.18 -7.30 9.94 30.62 0.30 -7.00 15 18 C -0.17 -7.64 9.23 30.62 0.28 -7.36 15 19 H 0.26 14.04 8.32 -92.70 -0.77 13.27 15 20 H 0.12 4.84 7.76 -2.91 -0.02 4.82 15 21 H 0.16 3.80 8.06 -2.91 -0.02 3.77 15 22 H 0.15 3.77 8.06 -2.91 -0.02 3.74 15 23 H 0.11 4.92 6.04 -2.91 -0.02 4.90 15 24 H 0.09 3.48 8.14 -2.39 -0.02 3.47 15 25 H 0.09 3.27 8.14 -2.39 -0.02 3.25 15 26 H 0.08 3.30 6.19 -2.39 -0.01 3.29 15 27 H 0.06 3.09 8.14 -2.39 -0.02 3.07 15 Total: -1.00 -57.30 254.00 5.45 -51.85 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.17 Total: 12.24 kcal Atomic # 6 Polarization: -57.48 SS G_CDS: 2.05 Total: -55.43 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.28 Total: -50.41 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.08 Total: -2.60 kcal Total: -57.30 5.45 -51.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714049796.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.991 kcal (2) G-P(sol) polarization free energy of solvation -57.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds