Wall clock time and date at job start Mon Mar 30 2020 02:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86801 * 119.99844 * 2 1 4 4 H 1.48499 * 109.47010 * 239.99829 * 3 2 1 5 5 H 1.48494 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46985 * 120.00237 * 3 2 1 7 7 C 1.39864 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00215 * 197.89047 * 7 2 1 9 9 C 1.41295 * 120.00153 * 17.89725 * 7 2 1 10 10 C 1.40462 * 120.22835 * 24.46177 * 9 7 2 11 11 C 1.39209 * 119.52061 * 180.02562 * 10 9 7 12 12 C 1.40660 * 120.37910 * 359.97368 * 11 10 9 13 13 C 1.40073 * 119.24697 * 0.02562 * 12 11 10 14 14 F 1.35102 * 119.61267 * 179.97438 * 13 12 11 15 15 C 1.36268 * 120.76677 * 359.97438 * 13 12 11 16 16 O 1.35313 * 110.98245 * 179.97438 * 12 11 10 17 17 C 1.42772 * 110.70945 * 0.02562 * 16 12 11 18 18 C 1.47318 * 131.70254 * 179.97438 * 11 10 9 19 19 O 1.21291 * 127.75688 * 359.75246 * 18 11 10 20 20 H 0.96996 * 120.00312 * 359.97438 * 1 2 3 21 21 H 1.08005 * 120.24244 * 359.97438 * 10 9 7 22 22 H 1.08002 * 119.72290 * 179.97438 * 15 13 12 23 23 H 1.09001 * 110.16488 * 240.88432 * 17 16 12 24 24 H 1.08997 * 110.16837 * 119.10395 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0966 1.6964 -1.2125 5 1 1.2779 2.7464 -0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0082 -1.2113 0.0005 8 1 3.0491 -1.2338 0.2879 9 6 1.3531 -2.4055 -0.3750 10 6 0.2254 -2.3606 -1.2112 11 6 -0.4091 -3.5461 -1.5715 12 6 0.0735 -4.7818 -1.1037 13 6 1.1994 -4.8058 -0.2707 14 9 1.6689 -5.9885 0.1832 15 6 1.8266 -3.6501 0.0870 16 8 -0.6821 -5.8040 -1.5675 17 6 -1.7404 -5.3159 -2.3922 18 6 -1.5870 -3.8099 -2.4160 19 8 -2.2811 -3.0017 -2.9958 20 1 -0.4850 0.8400 0.0004 21 1 -0.1474 -1.4130 -1.5713 22 1 2.6932 -3.6882 0.7304 23 1 -2.7056 -5.5884 -1.9653 24 1 -1.6476 -5.7191 -3.4005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714114698.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:16 Heat of formation + Delta-G solvation = -94.939283 kcal Electronic energy + Delta-G solvation = -14445.336680 eV Core-core repulsion = 11624.572971 eV Total energy + Delta-G solvation = -2820.763709 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.048 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.90679 -40.41587 -37.54989 -36.70313 -33.55619 -30.27031 -29.41628 -27.97210 -25.49887 -22.49398 -21.32708 -19.74995 -17.85726 -16.81336 -16.26213 -16.02376 -15.34679 -15.17303 -14.51208 -14.20842 -14.01315 -13.65909 -13.19255 -13.17902 -12.15753 -12.05755 -11.59528 -11.34328 -11.18739 -10.88480 -10.56138 -10.35056 -10.16348 -9.31867 -9.08651 -7.99796 -7.36064 -7.04818 -4.60168 1.42867 2.41929 2.87830 2.96376 2.98609 3.13535 3.74036 3.77732 4.26520 4.44937 5.06795 5.18861 5.36361 5.43897 5.75961 6.05380 6.28443 6.54549 6.69554 6.87155 6.98579 7.27533 7.45366 7.64092 7.89940 7.90488 8.19743 8.48488 8.52870 9.90794 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.031449 B = 0.010116 C = 0.007835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.126481 B = 2767.327481 C = 3572.964914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.448 4.448 8 H 0.088 0.912 9 C 0.097 3.903 10 C -0.064 4.064 11 C -0.222 4.222 12 C -0.028 4.028 13 C 0.107 3.893 14 F -0.158 7.158 15 C -0.205 4.205 16 O -0.292 6.292 17 C 0.006 3.994 18 C 0.387 3.613 19 O -0.446 6.446 20 H 0.289 0.711 21 H 0.137 0.863 22 H 0.123 0.877 23 H 0.112 0.888 24 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -2.732 -1.701 3.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.147 4.147 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.477 4.477 8 H 0.106 0.894 9 C 0.094 3.906 10 C -0.083 4.083 11 C -0.224 4.224 12 C -0.073 4.073 13 C 0.088 3.912 14 F -0.137 7.137 15 C -0.226 4.226 16 O -0.206 6.206 17 C -0.071 4.071 18 C 0.266 3.734 19 O -0.322 6.322 20 H 0.100 0.900 21 H 0.154 0.846 22 H 0.141 0.859 23 H 0.129 0.871 24 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.550 -2.428 -1.927 3.148 hybrid contribution 0.270 0.556 0.125 0.631 sum -0.280 -1.871 -1.802 2.613 Atomic orbital electron populations 1.69774 1.07730 1.30391 1.33042 1.26004 0.94848 1.01892 0.91999 0.86198 0.80053 0.79407 0.80251 1.18516 1.20085 1.18695 1.19497 0.98453 0.90554 1.39147 0.89409 1.17296 0.91448 0.91829 0.90053 1.21320 0.95764 0.95527 0.95700 1.20747 1.00841 0.94600 1.06260 1.18982 0.97061 0.86348 1.04921 1.16265 0.94026 0.81117 0.99814 1.91376 1.88204 1.46042 1.88074 1.20651 1.04490 0.90742 1.06671 1.86299 1.40353 1.30203 1.63787 1.23433 0.92102 0.94578 0.96971 1.22921 0.82671 0.90631 0.77155 1.90517 1.46988 1.55091 1.39624 0.90000 0.84556 0.85913 0.87053 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.11 10.96 55.54 0.61 -18.50 14 2 C 0.07 1.68 5.14 -17.34 -0.09 1.59 14 3 Si 0.92 17.31 29.60 -169.99 -5.03 12.28 14 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 14 5 H -0.28 -5.13 7.11 56.52 0.40 -4.73 14 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 14 7 C -0.45 -10.83 9.05 -37.81 -0.34 -11.17 14 8 H 0.09 1.99 7.91 -52.49 -0.41 1.57 14 9 C 0.10 2.39 5.57 -106.87 -0.60 1.79 14 10 C -0.06 -1.58 8.76 -38.38 -0.34 -1.92 14 11 C -0.22 -5.17 6.23 -104.93 -0.65 -5.83 14 12 C -0.03 -0.63 7.21 -37.98 -0.27 -0.91 14 13 C 0.11 2.46 7.26 -39.60 -0.29 2.18 14 14 F -0.16 -3.46 17.25 2.25 0.04 -3.43 14 15 C -0.20 -4.73 9.66 -39.26 -0.38 -5.11 14 16 O -0.29 -5.93 10.95 -17.63 -0.19 -6.12 14 17 C 0.01 0.09 7.92 36.35 0.29 0.38 14 18 C 0.39 7.98 8.04 -30.27 -0.24 7.73 14 19 O -0.45 -9.92 18.03 5.55 0.10 -9.82 14 20 H 0.29 6.42 8.30 -40.82 -0.34 6.08 14 21 H 0.14 3.55 6.16 -52.48 -0.32 3.22 14 22 H 0.12 2.58 8.06 -52.49 -0.42 2.16 14 23 H 0.11 1.52 8.14 -51.93 -0.42 1.10 14 24 H 0.11 1.49 8.14 -51.93 -0.42 1.06 14 LS Contribution 229.64 15.07 3.46 3.46 Total: -1.00 -26.81 229.64 -5.07 -31.87 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -1.14 Total: 1.51 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -2.91 Total: -11.26 kcal Atomic # 7 Polarization: -19.11 SS G_CDS: 0.61 Total: -18.50 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.09 Total: -15.94 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.04 Total: -3.43 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -26.81 -5.07 -31.87 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714114698.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.065 kcal (2) G-P(sol) polarization free energy of solvation -26.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds