Wall clock time and date at job start Mon Mar 30 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46898 * 109.47092 * 295.00148 * 3 2 1 14 14 C 1.46906 * 111.00183 * 84.99986 * 13 3 2 15 15 C 1.52992 * 117.49607 * 223.74706 * 14 13 3 16 16 C 1.52992 * 138.58318 * 121.61383 * 15 14 13 17 17 C 1.52994 * 138.58999 * 23.40396 * 15 14 13 18 18 C 1.52988 * 117.49965 * 155.08569 * 14 13 3 19 19 C 1.52993 * 138.58909 * 336.59516 * 18 14 13 20 20 C 1.52991 * 138.58759 * 238.37882 * 18 14 13 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 27 27 H 1.00904 * 110.99887 * 208.95040 * 13 3 2 28 28 H 1.09002 * 115.54915 * 9.41392 * 14 13 3 29 29 H 1.09003 * 117.50266 * 336.60030 * 16 15 14 30 30 H 1.09005 * 117.50078 * 121.62068 * 16 15 14 31 31 H 1.08994 * 117.50159 * 238.37603 * 17 15 14 32 32 H 1.09002 * 117.49391 * 23.37627 * 17 15 14 33 33 H 1.09002 * 117.49857 * 336.59644 * 19 18 14 34 34 H 1.08996 * 117.50100 * 121.62049 * 19 18 14 35 35 H 1.09002 * 117.50207 * 238.38378 * 20 18 14 36 36 H 1.09001 * 117.49878 * 23.38062 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6514 2.0992 -1.2552 14 6 0.2913 2.6468 -1.1638 15 6 -0.6401 2.4275 -2.3575 16 6 -1.9982 1.7869 -2.6506 17 6 -0.7914 1.4591 -3.5322 18 6 -0.0620 3.8179 -2.0826 19 6 0.6539 4.9346 -2.8450 20 6 -0.5532 5.2619 -1.9636 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.8293 -0.0605 2.9503 27 1 2.3140 2.8171 -1.5079 28 1 -0.1542 2.6353 -0.1690 29 1 -2.3476 1.0128 -1.9673 30 1 -2.7739 2.4238 -3.0759 31 1 -0.7732 1.8802 -4.5373 32 1 -0.3464 0.4694 -3.4289 33 1 1.6368 5.2393 -2.4857 34 1 0.5143 4.9761 -3.9252 35 1 -1.4869 5.5188 -2.4640 36 1 -0.3647 5.7819 -1.0243 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715263354.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:55 Heat of formation + Delta-G solvation = 87.295101 kcal Electronic energy + Delta-G solvation = -15291.213527 eV Core-core repulsion = 12971.197250 eV Total energy + Delta-G solvation = -2320.016277 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.65489 -35.55694 -34.77796 -32.28450 -30.71069 -28.57118 -25.76453 -22.72795 -22.37356 -21.83619 -19.39949 -19.36070 -18.00586 -16.49981 -15.11109 -15.00142 -14.65808 -14.61872 -13.86096 -13.75453 -12.60391 -12.25541 -11.91401 -11.64226 -11.35987 -11.22824 -11.21053 -11.02620 -10.82179 -10.69589 -10.48779 -9.96840 -9.84854 -9.74346 -9.41990 -9.16143 -9.08600 -8.78473 -8.40774 -7.20841 -6.02992 -4.10015 3.30683 3.35275 3.37933 3.66638 3.99191 4.39305 4.46747 4.56700 4.72589 5.12786 5.27415 5.51102 5.67441 5.73796 5.77197 5.81257 5.87198 5.97693 6.09249 6.21166 6.24002 6.29691 6.31484 6.37669 6.47742 6.50444 6.67088 7.09778 7.15952 7.39811 7.60233 7.77777 7.89627 8.29776 8.41290 8.65204 9.00377 9.55631 11.02497 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.032067 B = 0.007955 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.968719 B = 3519.017014 C = 4033.628252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.521 4.521 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.654 5.654 14 C 0.146 3.854 15 C -0.164 4.164 16 C -0.141 4.141 17 C -0.123 4.123 18 C -0.196 4.196 19 C -0.130 4.130 20 C -0.138 4.138 21 H 0.055 0.945 22 H 0.034 0.966 23 H 0.027 0.973 24 H 0.090 0.910 25 H 0.037 0.963 26 H 0.262 0.738 27 H 0.337 0.663 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.753 4.994 -7.227 11.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.559 4.559 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.284 5.284 14 C 0.035 3.965 15 C -0.166 4.166 16 C -0.178 4.178 17 C -0.160 4.160 18 C -0.198 4.198 19 C -0.167 4.167 20 C -0.175 4.175 21 H 0.074 0.926 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.108 0.892 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.157 0.843 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.887 4.294 -7.317 11.583 hybrid contribution 1.061 0.706 0.631 1.422 sum -6.826 4.999 -6.686 10.784 Atomic orbital electron populations 1.22033 0.99725 0.98991 1.00438 1.21510 0.91480 0.99427 1.01950 1.19205 0.94528 0.91182 0.83907 0.97903 1.21232 0.91203 1.38273 1.05237 0.92277 1.24907 0.98276 0.95101 0.95598 1.69882 1.34981 1.38349 1.09439 0.86587 0.85468 0.78193 0.77315 1.20349 1.21287 1.20198 1.60337 0.99539 1.31743 1.36759 1.22037 0.91771 0.91200 0.91515 1.21569 0.98908 0.94210 1.01905 1.22674 0.90218 1.02098 1.02819 1.22485 1.00289 0.99486 0.93747 1.21906 1.06141 0.85176 1.06527 1.22531 0.96616 1.00001 0.97515 1.22634 0.98063 0.95454 1.01397 0.92583 0.94643 0.95378 0.89205 0.94421 0.92833 0.84324 0.88808 0.88747 0.89480 0.89668 0.88299 0.88589 0.89210 0.89276 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.85 37.16 0.33 -2.89 16 2 C -0.11 -2.58 5.45 -26.74 -0.15 -2.72 16 3 C 0.22 5.50 2.21 -68.87 -0.15 5.35 16 4 H 0.00 0.09 7.57 -51.93 -0.39 -0.30 16 5 C -0.52 -14.20 8.59 -34.44 -0.30 -14.50 16 6 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.19 11.29 55.43 0.63 -24.56 16 9 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.65 -14.16 6.50 -100.96 -0.66 -14.81 16 14 C 0.15 2.79 4.05 -67.72 -0.27 2.51 16 15 C -0.16 -2.75 4.65 -154.48 -0.72 -3.47 16 16 C -0.14 -1.99 10.20 -26.74 -0.27 -2.26 16 17 C -0.12 -1.85 10.47 -26.73 -0.28 -2.13 16 18 C -0.20 -3.21 5.48 -154.49 -0.85 -4.06 16 19 C -0.13 -1.82 10.53 -26.73 -0.28 -2.10 16 20 C -0.14 -1.86 10.53 -26.74 -0.28 -2.15 16 21 H 0.06 1.10 4.42 -51.93 -0.23 0.87 16 22 H 0.03 0.73 8.13 -51.93 -0.42 0.31 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.34 7.24 8.18 -39.29 -0.32 6.91 16 28 H 0.09 1.90 7.11 -51.93 -0.37 1.53 16 29 H 0.09 1.30 7.92 -51.93 -0.41 0.89 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 33 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 293.46 15.07 4.42 4.42 Total: -1.00 -27.86 293.46 -9.74 -37.60 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.80 Total: 7.94 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -3.31 Total: -26.78 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.03 Total: -39.38 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.86 -9.74 -37.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715263354.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.898 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds