Wall clock time and date at job start Mon Mar 30 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46898 * 109.47092 * 295.00148 * 3 2 1 14 14 C 1.46906 * 111.00183 * 84.99986 * 13 3 2 15 15 C 1.52992 * 117.49607 * 223.74706 * 14 13 3 16 16 C 1.52992 * 138.58318 * 121.61383 * 15 14 13 17 17 C 1.52994 * 138.58999 * 23.40396 * 15 14 13 18 18 C 1.52988 * 117.49965 * 155.08569 * 14 13 3 19 19 C 1.52993 * 138.58909 * 336.59516 * 18 14 13 20 20 C 1.52991 * 138.58759 * 238.37882 * 18 14 13 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 27 27 H 1.00904 * 110.99887 * 208.95040 * 13 3 2 28 28 H 1.09002 * 115.54915 * 9.41392 * 14 13 3 29 29 H 1.09003 * 117.50266 * 336.60030 * 16 15 14 30 30 H 1.09005 * 117.50078 * 121.62068 * 16 15 14 31 31 H 1.08994 * 117.50159 * 238.37603 * 17 15 14 32 32 H 1.09002 * 117.49391 * 23.37627 * 17 15 14 33 33 H 1.09002 * 117.49857 * 336.59644 * 19 18 14 34 34 H 1.08996 * 117.50100 * 121.62049 * 19 18 14 35 35 H 1.09002 * 117.50207 * 238.38378 * 20 18 14 36 36 H 1.09001 * 117.49878 * 23.38062 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6514 2.0992 -1.2552 14 6 0.2913 2.6468 -1.1638 15 6 -0.6401 2.4275 -2.3575 16 6 -1.9982 1.7869 -2.6506 17 6 -0.7914 1.4591 -3.5322 18 6 -0.0620 3.8179 -2.0826 19 6 0.6539 4.9346 -2.8450 20 6 -0.5532 5.2619 -1.9636 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.8293 -0.0605 2.9503 27 1 2.3140 2.8171 -1.5079 28 1 -0.1542 2.6353 -0.1690 29 1 -2.3476 1.0128 -1.9673 30 1 -2.7739 2.4238 -3.0759 31 1 -0.7732 1.8802 -4.5373 32 1 -0.3464 0.4694 -3.4289 33 1 1.6368 5.2393 -2.4857 34 1 0.5143 4.9761 -3.9252 35 1 -1.4869 5.5188 -2.4640 36 1 -0.3647 5.7819 -1.0243 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715263354.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:55 Heat of formation + Delta-G solvation = 71.918903 kcal Electronic energy + Delta-G solvation = -15291.880289 eV Core-core repulsion = 12971.197250 eV Total energy + Delta-G solvation = -2320.683039 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.98648 -37.34602 -35.93359 -34.23405 -32.45285 -30.18289 -27.64596 -24.65022 -23.49117 -22.93684 -21.34265 -20.85938 -19.21440 -18.44865 -16.92113 -16.22605 -16.14547 -16.01885 -15.58394 -15.25169 -14.47194 -14.02952 -13.63811 -13.15094 -12.96785 -12.88186 -12.69179 -12.39880 -12.30587 -12.22179 -12.07807 -11.71179 -11.49413 -11.41489 -11.04668 -10.80350 -10.45944 -10.43392 -10.31478 -8.91937 -8.13329 -6.28251 1.41021 1.43058 1.50651 2.38158 2.50286 2.72404 3.13834 3.25225 3.35324 3.41400 3.90323 4.20559 4.37992 4.53764 4.58418 4.62471 4.64733 4.71513 4.73952 4.79359 4.86705 4.90360 4.90704 5.01212 5.10680 5.13773 5.27032 5.34395 5.35503 5.47752 5.63756 5.69263 5.86512 6.27370 6.48861 6.77662 6.97823 7.41806 8.91221 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.032067 B = 0.007955 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.968719 B = 3519.017014 C = 4033.628252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 C 0.227 3.773 4 H -0.033 1.033 5 C -0.542 4.542 6 H 0.057 0.943 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.962 3.038 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.650 5.650 14 C 0.114 3.886 15 C -0.178 4.178 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.210 4.210 19 C -0.124 4.124 20 C -0.120 4.120 21 H 0.069 0.931 22 H 0.029 0.971 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.027 0.973 26 H 0.263 0.737 27 H 0.333 0.667 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 5.855 -8.766 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C 0.119 3.881 4 H -0.016 1.016 5 C -0.581 4.581 6 H 0.076 0.924 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.787 3.213 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.279 5.279 14 C 0.004 3.996 15 C -0.180 4.180 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.211 4.211 19 C -0.161 4.161 20 C -0.157 4.157 21 H 0.087 0.913 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.152 0.848 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.631 5.162 -8.869 13.409 hybrid contribution 1.247 0.473 1.103 1.730 sum -7.384 5.635 -7.766 12.107 Atomic orbital electron populations 1.21889 0.96928 1.00290 1.00801 1.21330 0.94000 0.98527 0.99854 1.18949 0.93466 0.91426 0.84234 1.01562 1.21584 0.92531 1.38462 1.05476 0.92438 1.25719 1.02853 0.94655 0.95237 1.70020 1.36737 1.38818 1.09815 0.85556 0.79927 0.78443 0.77364 1.19583 1.20815 1.19715 1.60298 1.00997 1.32128 1.34510 1.21836 0.90637 0.95342 0.91826 1.21594 1.00588 0.94679 1.01138 1.22816 0.89728 1.01578 1.01741 1.22577 1.00642 0.98458 0.94301 1.21925 1.07491 0.86001 1.05722 1.22684 0.96869 0.97989 0.98576 1.22796 0.98813 0.92558 1.01563 0.91270 0.95224 0.93491 0.92102 0.95436 0.92815 0.84830 0.90996 0.88581 0.86899 0.87771 0.89535 0.88820 0.87408 0.86911 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.98 8.85 71.98 0.64 -5.34 16 2 C -0.10 -4.98 5.45 30.59 0.17 -4.81 16 3 C 0.23 11.89 2.21 44.17 0.10 11.99 16 4 H -0.03 -1.93 7.57 -2.39 -0.02 -1.95 16 5 C -0.54 -30.40 8.59 25.60 0.22 -30.18 16 6 H 0.06 3.16 7.62 -2.91 -0.02 3.13 16 7 C 0.01 0.83 5.29 84.65 0.45 1.28 16 8 N -0.91 -53.34 11.29 21.45 0.24 -53.10 16 9 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 N -0.65 -28.89 6.50 -473.34 -3.08 -31.96 16 14 C 0.11 4.40 4.05 44.91 0.18 4.58 16 15 C -0.18 -5.70 4.65 -52.17 -0.24 -5.94 16 16 C -0.12 -3.08 10.20 30.59 0.31 -2.77 16 17 C -0.12 -3.42 10.47 30.59 0.32 -3.10 16 18 C -0.21 -6.56 5.48 -52.17 -0.29 -6.85 16 19 C -0.12 -3.19 10.53 30.59 0.32 -2.87 16 20 C -0.12 -2.91 10.53 30.59 0.32 -2.59 16 21 H 0.07 2.71 4.42 -2.39 -0.01 2.70 16 22 H 0.03 1.25 8.13 -2.39 -0.02 1.23 16 23 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.06 3.43 5.95 -2.39 -0.01 3.42 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.33 14.69 8.18 -89.69 -0.73 13.96 16 28 H 0.07 3.04 7.11 -2.39 -0.02 3.02 16 29 H 0.10 2.41 7.92 -2.39 -0.02 2.39 16 30 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -60.90 293.46 2.01 -58.89 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.32 Total: 26.79 kcal Atomic # 6 Polarization: -49.09 SS G_CDS: 2.50 Total: -46.59 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -2.84 Total: -85.06 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -60.90 2.01 -58.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715263354.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.810 kcal (2) G-P(sol) polarization free energy of solvation -60.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds