Wall clock time and date at job start Mon Mar 30 2020 02:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 C 1.46897 * 111.00568 * 275.00494 * 13 2 1 15 15 C 1.52993 * 117.49875 * 223.74884 * 14 13 2 16 16 C 1.52998 * 138.58911 * 121.61344 * 15 14 13 17 17 C 1.52999 * 138.58801 * 23.40000 * 15 14 13 18 18 C 1.52994 * 117.50044 * 155.08967 * 14 13 2 19 19 C 1.52990 * 138.58451 * 336.58657 * 18 14 13 20 20 C 1.52991 * 138.58374 * 238.38376 * 18 14 13 21 21 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 23 23 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 24 24 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 25 25 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 26 26 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 27 27 H 1.00900 * 110.99432 * 151.04537 * 13 2 1 28 28 H 1.09006 * 115.54638 * 9.41275 * 14 13 2 29 29 H 1.09000 * 117.49484 * 336.59846 * 16 15 14 30 30 H 1.09003 * 117.49957 * 121.61550 * 16 15 14 31 31 H 1.08998 * 117.49718 * 238.38222 * 17 15 14 32 32 H 1.08999 * 117.49554 * 23.38127 * 17 15 14 33 33 H 1.09001 * 117.49937 * 336.60513 * 19 18 14 34 34 H 1.09006 * 117.49647 * 121.62584 * 19 18 14 35 35 H 1.09001 * 117.50090 * 238.37895 * 20 18 14 36 36 H 1.09006 * 117.50096 * 23.37296 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.7001 -2.2147 -1.7239 11 1 6.5298 -1.0702 -3.8551 12 1 6.5267 0.2031 -1.7914 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2226 2.3470 15 6 3.3279 0.1599 3.2332 16 6 4.4444 1.0906 3.7107 17 6 4.7889 -0.2822 3.1295 18 6 1.9950 -0.3912 3.7457 19 6 1.4569 -1.6597 4.4103 20 6 1.1129 -0.2868 4.9913 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -0.2617 -2.1370 25 1 1.7517 -1.7715 -1.2055 26 1 4.0609 -2.2444 -4.0348 27 1 2.9173 -1.1204 1.0288 28 1 1.6208 1.1985 2.1958 29 1 4.6658 1.9657 3.0998 30 1 4.5616 1.2258 4.7860 31 1 5.1327 -1.0502 3.8224 32 1 5.2368 -0.3106 2.1362 33 1 0.6638 -2.2008 3.8941 34 1 2.1648 -2.2773 4.9633 35 1 1.5945 -0.0010 5.9265 36 1 0.0937 0.0758 4.8575 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715346121.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:10 Heat of formation + Delta-G solvation = 78.961519 kcal Electronic energy + Delta-G solvation = -15038.768595 eV Core-core repulsion = 12718.390947 eV Total energy + Delta-G solvation = -2320.377648 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.72119 -35.83813 -34.82826 -32.64232 -30.71016 -27.39645 -27.19820 -23.06737 -22.43749 -21.91076 -19.52288 -19.42662 -18.07926 -16.34813 -15.35285 -15.14144 -14.80667 -14.63557 -14.41716 -13.67592 -12.88051 -12.09435 -11.91288 -11.66866 -11.43928 -11.37251 -11.30043 -11.25376 -10.85156 -10.77255 -10.63281 -10.45560 -10.27187 -9.80139 -9.47306 -9.26233 -9.10371 -9.07074 -8.40232 -7.53146 -6.03572 -4.06691 3.28829 3.35743 3.37828 3.55470 3.89257 4.35941 4.42309 4.48133 4.55432 5.01314 5.27610 5.39142 5.46432 5.63281 5.72591 5.75040 5.77845 5.90926 5.94805 5.97404 5.99894 6.05889 6.19370 6.23184 6.32946 6.35243 6.36598 6.55704 6.91947 6.93895 7.54172 7.62991 7.95732 8.05213 8.26413 8.36302 8.99308 9.57497 11.07379 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.025893 B = 0.008404 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.134583 B = 3330.959130 C = 4061.227038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.032 0.968 4 C 0.020 3.980 5 C -0.524 4.524 6 H 0.052 0.948 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.649 5.649 14 C 0.141 3.859 15 C -0.203 4.203 16 C -0.136 4.136 17 C -0.129 4.129 18 C -0.169 4.169 19 C -0.124 4.124 20 C -0.138 4.138 21 H 0.055 0.945 22 H 0.037 0.963 23 H 0.049 0.951 24 H 0.023 0.977 25 H 0.026 0.974 26 H 0.261 0.739 27 H 0.361 0.639 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 3.679 13.318 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.050 0.950 4 C -0.018 4.018 5 C -0.562 4.562 6 H 0.070 0.930 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.281 5.281 14 C 0.029 3.971 15 C -0.205 4.205 16 C -0.173 4.173 17 C -0.166 4.166 18 C -0.171 4.171 19 C -0.161 4.161 20 C -0.175 4.175 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.185 0.815 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.641 3.310 13.249 13.910 hybrid contribution 1.891 0.513 -0.265 1.978 sum -0.750 3.823 12.985 13.556 Atomic orbital electron populations 1.21812 0.96590 1.01403 0.99540 1.21701 0.93426 0.95998 0.91073 0.95008 1.19291 0.95481 0.96224 0.90767 1.21168 0.92180 1.34527 1.08340 0.92989 1.24979 0.98202 0.95176 0.95683 1.69959 1.35486 1.35562 1.11949 0.86656 0.86019 0.78440 0.77282 1.20573 1.21205 1.19961 1.60216 1.34300 1.30038 1.03515 1.22000 0.93664 0.94681 0.86748 1.22014 0.85937 1.05782 1.06748 1.22631 1.00329 0.94094 1.00239 1.22608 0.94272 0.97178 1.02519 1.21609 0.96422 1.03012 0.96061 1.22515 1.02220 0.89857 1.01514 1.22644 0.99165 1.00602 0.95070 0.92635 0.94431 0.93234 0.95890 0.95571 0.92936 0.81503 0.87958 0.88754 0.89252 0.89051 0.88060 0.88276 0.89427 0.89324 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.42 37.15 0.35 -2.12 16 2 C 0.09 1.83 2.49 -67.71 -0.17 1.66 16 3 H 0.03 0.68 7.74 -51.92 -0.40 0.28 16 4 C 0.02 0.50 4.57 -27.88 -0.13 0.37 16 5 C -0.52 -14.35 8.12 -34.44 -0.28 -14.63 16 6 H 0.05 1.39 7.49 -52.49 -0.39 1.00 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.65 -12.91 6.59 -99.74 -0.66 -13.57 16 14 C 0.14 2.44 6.02 -67.72 -0.41 2.04 16 15 C -0.20 -3.25 5.36 -154.48 -0.83 -4.08 16 16 C -0.14 -1.86 10.53 -26.73 -0.28 -2.14 16 17 C -0.13 -1.94 10.53 -26.73 -0.28 -2.22 16 18 C -0.17 -2.63 5.60 -154.49 -0.87 -3.49 16 19 C -0.12 -1.70 10.53 -26.74 -0.28 -1.98 16 20 C -0.14 -1.73 10.53 -26.74 -0.28 -2.01 16 21 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 22 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.36 7.88 7.03 -39.29 -0.28 7.60 16 28 H 0.10 1.73 7.77 -51.93 -0.40 1.33 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 304.00 15.07 4.58 4.58 Total: -1.00 -28.79 304.00 -10.01 -38.80 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.10 Total: 6.53 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -3.55 Total: -26.98 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.08 Total: -39.28 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.79 -10.01 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715346121.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.766 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds