Wall clock time and date at job start Mon Mar 30 2020 02:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 C 1.46897 * 111.00568 * 275.00494 * 13 2 1 15 15 C 1.52993 * 117.49875 * 223.74884 * 14 13 2 16 16 C 1.52998 * 138.58911 * 121.61344 * 15 14 13 17 17 C 1.52999 * 138.58801 * 23.40000 * 15 14 13 18 18 C 1.52994 * 117.50044 * 155.08967 * 14 13 2 19 19 C 1.52990 * 138.58451 * 336.58657 * 18 14 13 20 20 C 1.52991 * 138.58374 * 238.38376 * 18 14 13 21 21 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 23 23 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 24 24 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 25 25 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 26 26 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 27 27 H 1.00900 * 110.99432 * 151.04537 * 13 2 1 28 28 H 1.09006 * 115.54638 * 9.41275 * 14 13 2 29 29 H 1.09000 * 117.49484 * 336.59846 * 16 15 14 30 30 H 1.09003 * 117.49957 * 121.61550 * 16 15 14 31 31 H 1.08998 * 117.49718 * 238.38222 * 17 15 14 32 32 H 1.08999 * 117.49554 * 23.38127 * 17 15 14 33 33 H 1.09001 * 117.49937 * 336.60513 * 19 18 14 34 34 H 1.09006 * 117.49647 * 121.62584 * 19 18 14 35 35 H 1.09001 * 117.50090 * 238.37895 * 20 18 14 36 36 H 1.09006 * 117.50096 * 23.37296 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.7001 -2.2147 -1.7239 11 1 6.5298 -1.0702 -3.8551 12 1 6.5267 0.2031 -1.7914 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2226 2.3470 15 6 3.3279 0.1599 3.2332 16 6 4.4444 1.0906 3.7107 17 6 4.7889 -0.2822 3.1295 18 6 1.9950 -0.3912 3.7457 19 6 1.4569 -1.6597 4.4103 20 6 1.1129 -0.2868 4.9913 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -0.2617 -2.1370 25 1 1.7517 -1.7715 -1.2055 26 1 4.0609 -2.2444 -4.0348 27 1 2.9173 -1.1204 1.0288 28 1 1.6208 1.1985 2.1958 29 1 4.6658 1.9657 3.0998 30 1 4.5616 1.2258 4.7860 31 1 5.1327 -1.0502 3.8224 32 1 5.2368 -0.3106 2.1362 33 1 0.6638 -2.2008 3.8941 34 1 2.1648 -2.2773 4.9633 35 1 1.5945 -0.0010 5.9265 36 1 0.0937 0.0758 4.8575 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715346121.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:10 Heat of formation + Delta-G solvation = 63.264245 kcal Electronic energy + Delta-G solvation = -15039.449280 eV Core-core repulsion = 12718.390947 eV Total energy + Delta-G solvation = -2321.058333 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95678 -37.48154 -35.92430 -34.69236 -32.21495 -29.32537 -28.62535 -25.09171 -23.51753 -22.96177 -21.16951 -20.84763 -19.20799 -18.52117 -16.89417 -16.39199 -16.25135 -16.18324 -15.72916 -15.14569 -14.64590 -13.72766 -13.51211 -13.35819 -13.21212 -12.81937 -12.63378 -12.47804 -12.44070 -12.31144 -12.29595 -11.92719 -11.65520 -11.42978 -11.03315 -11.00717 -10.59415 -10.48355 -10.36195 -9.02995 -8.20981 -6.31423 1.37974 1.38417 1.48821 2.38536 2.40812 2.69911 3.09607 3.19554 3.32767 3.37010 3.78208 4.09772 4.29385 4.33837 4.51142 4.55893 4.58030 4.61777 4.70579 4.72942 4.79094 4.86896 4.88560 4.98213 5.01313 5.12167 5.19432 5.23277 5.31759 5.32957 5.47005 5.54413 5.81886 6.18997 6.42122 6.57013 6.83152 7.37233 8.90769 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.025893 B = 0.008404 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.134583 B = 3330.959130 C = 4061.227038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.097 3.903 3 H 0.026 0.974 4 C 0.027 3.973 5 C -0.533 4.533 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.958 3.042 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.265 1.265 13 N -0.651 5.651 14 C 0.116 3.884 15 C -0.220 4.220 16 C -0.114 4.114 17 C -0.139 4.139 18 C -0.184 4.184 19 C -0.129 4.129 20 C -0.112 4.112 21 H 0.048 0.952 22 H 0.060 0.940 23 H 0.055 0.945 24 H -0.002 1.002 25 H -0.004 1.004 26 H 0.263 0.737 27 H 0.346 0.654 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 4.534 15.544 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.013 4.013 3 H 0.044 0.956 4 C -0.010 4.010 5 C -0.571 4.571 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.189 1.189 13 N -0.282 5.282 14 C 0.005 3.995 15 C -0.222 4.222 16 C -0.151 4.151 17 C -0.176 4.176 18 C -0.185 4.185 19 C -0.166 4.166 20 C -0.149 4.149 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.016 0.984 25 H 0.015 0.985 26 H 0.072 0.928 27 H 0.167 0.833 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.057 4.181 15.501 16.186 hybrid contribution 1.672 0.238 -0.942 1.933 sum -0.385 4.419 14.559 15.219 Atomic orbital electron populations 1.21713 0.94302 1.01447 1.00980 1.21498 0.95200 0.94833 0.89754 0.95561 1.19141 0.94955 0.94693 0.92223 1.21483 0.93187 1.34165 1.08287 0.92652 1.25870 1.03293 0.94781 0.95299 1.70090 1.37536 1.36647 1.12710 0.85551 0.79897 0.78878 0.77380 1.19779 1.20861 1.18939 1.60272 1.33345 1.30846 1.03722 1.22000 0.96090 0.94676 0.86692 1.22075 0.86189 1.07524 1.06385 1.22743 0.97588 0.93191 1.01623 1.22644 0.93828 0.98959 1.02131 1.21672 0.96159 1.05073 0.95606 1.22626 1.02208 0.90283 1.01469 1.22799 0.99169 0.98703 0.94196 0.93267 0.92125 0.92595 0.98358 0.98514 0.92793 0.83324 0.87815 0.88511 0.86783 0.87683 0.89990 0.88852 0.88418 0.87241 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 9.42 71.98 0.68 -3.89 16 2 C 0.10 4.12 2.49 44.91 0.11 4.23 16 3 H 0.03 1.14 7.74 -2.38 -0.02 1.12 16 4 C 0.03 1.45 4.57 29.85 0.14 1.58 16 5 C -0.53 -29.88 8.12 25.60 0.21 -29.67 16 6 H 0.06 3.00 7.49 -2.91 -0.02 2.98 16 7 C 0.01 0.33 5.46 84.66 0.46 0.80 16 8 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 9 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 N -0.65 -26.22 6.59 -469.49 -3.09 -29.31 16 14 C 0.12 3.95 6.02 44.91 0.27 4.22 16 15 C -0.22 -6.71 5.36 -52.16 -0.28 -6.99 16 16 C -0.11 -2.85 10.53 30.60 0.32 -2.53 16 17 C -0.14 -4.00 10.53 30.60 0.32 -3.68 16 18 C -0.18 -5.33 5.60 -52.17 -0.29 -5.62 16 19 C -0.13 -3.25 10.53 30.59 0.32 -2.93 16 20 C -0.11 -2.42 10.53 30.59 0.32 -2.10 16 21 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 22 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 23 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 25 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 27 H 0.35 15.48 7.03 -89.69 -0.63 14.85 16 28 H 0.10 3.41 7.77 -2.38 -0.02 3.39 16 29 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.11 1.95 8.14 -2.39 -0.02 1.94 16 36 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -62.34 304.00 2.21 -60.13 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.41 Total: 25.79 kcal Atomic # 6 Polarization: -49.16 SS G_CDS: 2.58 Total: -46.58 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -2.81 Total: -85.57 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -62.34 2.21 -60.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715346121.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.392 kcal (2) G-P(sol) polarization free energy of solvation -62.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds