Wall clock time and date at job start Mon Mar 30 2020 02:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47347 * 119.99844 * 2 1 3 5 5 C 1.50702 * 109.47159 * 185.00014 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46899 * 109.47404 * 240.00466 * 2 1 3 14 14 C 1.46896 * 111.00161 * 84.99487 * 13 2 1 15 15 C 1.52997 * 117.49914 * 223.74585 * 14 13 2 16 16 C 1.52992 * 138.58343 * 121.61637 * 15 14 13 17 17 C 1.52999 * 138.58278 * 23.41253 * 15 14 13 18 18 C 1.52994 * 117.49738 * 155.09194 * 14 13 2 19 19 C 1.52999 * 138.58431 * 336.58981 * 18 14 13 20 20 C 1.52994 * 138.58497 * 238.38549 * 18 14 13 21 21 H 1.09003 * 109.47483 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.47295 * 60.00152 * 1 2 3 23 23 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47066 * 65.00217 * 4 2 1 25 25 H 1.08994 * 109.47405 * 305.00047 * 4 2 1 26 26 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 27 27 H 1.00906 * 111.00046 * 208.95603 * 13 2 1 28 28 H 1.08997 * 115.55004 * 9.42213 * 14 13 2 29 29 H 1.09001 * 117.49861 * 336.60197 * 16 15 14 30 30 H 1.08993 * 117.49993 * 121.62695 * 16 15 14 31 31 H 1.08997 * 117.49623 * 238.37474 * 17 15 14 32 32 H 1.09002 * 117.49808 * 23.37357 * 17 15 14 33 33 H 1.08994 * 117.50118 * 336.60246 * 19 18 14 34 34 H 1.09007 * 117.49684 * 121.62738 * 19 18 14 35 35 H 1.09001 * 117.50104 * 238.37203 * 20 18 14 36 36 H 1.09001 * 117.50311 * 23.37214 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2300 -1.1881 2.3611 8 7 3.5760 -1.8324 3.3027 9 14 6.0909 -1.0496 2.4437 10 1 6.4787 0.3828 2.5007 11 1 6.5856 -1.7455 3.6588 12 1 6.6882 -1.6765 1.2372 13 7 2.0197 -0.6924 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 1.5652 -0.2933 -3.6911 16 6 0.5085 0.0784 -4.7331 17 6 0.6017 -1.3590 -4.2172 18 6 3.0687 -0.1149 -3.4666 19 6 4.3603 -0.9130 -3.6560 20 6 4.2664 0.5243 -4.1720 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.7517 -1.7715 1.2056 25 1 1.6054 -0.2617 2.1369 26 1 4.0601 -2.2360 4.0401 27 1 2.9174 -1.1204 -1.0287 28 1 1.9231 1.2762 -2.1172 29 1 -0.3378 0.6790 -4.3996 30 1 0.8504 0.2713 -5.7499 31 1 1.0049 -2.1117 -4.8946 32 1 -0.1830 -1.7044 -3.5440 33 1 4.9752 -1.0920 -2.7741 34 1 4.3529 -1.7145 -4.3948 35 1 4.1974 0.6684 -5.2503 36 1 4.8195 1.2912 -3.6298 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715346124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:12 Heat of formation + Delta-G solvation = 63.947358 kcal Electronic energy + Delta-G solvation = -14997.390172 eV Core-core repulsion = 12676.361461 eV Total energy + Delta-G solvation = -2321.028711 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.92919 -37.48893 -35.92361 -34.68820 -32.21435 -29.32139 -28.65052 -25.08567 -23.50718 -22.95338 -21.18625 -20.80090 -19.21350 -18.52104 -16.84432 -16.35859 -16.22493 -16.17272 -15.75272 -15.34021 -14.67746 -13.72920 -13.51674 -13.34325 -13.12417 -12.81078 -12.60914 -12.49924 -12.42244 -12.31123 -12.27272 -11.94750 -11.64062 -11.38749 -11.03058 -10.96555 -10.58685 -10.48314 -10.34709 -9.08207 -8.20864 -6.31714 1.38187 1.40199 1.48049 2.38788 2.41528 2.68878 3.10009 3.20238 3.29307 3.38524 3.78574 4.11526 4.29185 4.34342 4.52094 4.55559 4.58800 4.62614 4.71909 4.73196 4.79284 4.88164 4.89460 4.99712 5.00296 5.12316 5.19885 5.24362 5.31198 5.33297 5.46120 5.53918 5.81644 6.18710 6.42757 6.57414 6.82702 7.36980 8.90624 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.008062 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.317285 B = 3472.334279 C = 4241.554401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.097 3.903 3 H 0.026 0.974 4 C 0.028 3.972 5 C -0.536 4.536 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.959 3.041 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.266 1.266 13 N -0.651 5.651 14 C 0.109 3.891 15 C -0.180 4.180 16 C -0.115 4.115 17 C -0.126 4.126 18 C -0.208 4.208 19 C -0.135 4.135 20 C -0.116 4.116 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.048 0.952 24 H -0.003 1.003 25 H -0.003 1.003 26 H 0.264 0.736 27 H 0.345 0.655 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 4.222 -15.815 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.012 4.012 3 H 0.044 0.956 4 C -0.009 4.009 5 C -0.574 4.574 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.784 3.216 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.191 1.191 13 N -0.283 5.283 14 C -0.001 4.001 15 C -0.182 4.182 16 C -0.152 4.152 17 C -0.163 4.163 18 C -0.209 4.209 19 C -0.172 4.172 20 C -0.153 4.153 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.072 0.928 27 H 0.167 0.833 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.716 3.868 -15.776 16.469 hybrid contribution 1.633 0.286 0.962 1.917 sum -1.083 4.153 -14.814 15.423 Atomic orbital electron populations 1.21686 0.94391 1.01359 1.00834 1.21511 0.95193 0.94734 0.89775 0.95633 1.19131 0.94922 0.94691 0.92194 1.21467 0.93233 1.34454 1.08263 0.92651 1.25882 1.03369 0.94727 0.95259 1.70088 1.37665 1.36622 1.12560 0.85590 0.79732 0.78500 0.77779 1.19488 1.20910 1.19079 1.60238 1.33276 1.31130 1.03617 1.21946 0.98747 0.94011 0.85412 1.21625 0.90347 1.07939 0.98269 1.22810 0.97761 0.97508 0.97084 1.22600 0.99648 0.92227 1.01851 1.21821 0.86527 1.08809 1.03764 1.22667 0.96237 0.95536 1.02752 1.22784 0.96455 0.95488 1.00551 0.92676 0.92297 0.93302 0.98504 0.98422 0.92769 0.83343 0.89143 0.87872 0.87179 0.88329 0.89020 0.89589 0.87598 0.86739 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 9.42 71.98 0.68 -3.88 16 2 C 0.10 4.18 2.55 44.91 0.11 4.29 16 3 H 0.03 1.12 7.57 -2.38 -0.02 1.10 16 4 C 0.03 1.49 4.57 29.85 0.14 1.63 16 5 C -0.54 -30.10 8.12 25.60 0.21 -29.90 16 6 H 0.06 3.00 7.49 -2.91 -0.02 2.97 16 7 C 0.01 0.34 5.46 84.66 0.46 0.81 16 8 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 9 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 N -0.65 -26.30 6.55 -469.50 -3.08 -29.38 16 14 C 0.11 3.74 6.03 44.91 0.27 4.01 16 15 C -0.18 -5.23 5.60 -52.17 -0.29 -5.52 16 16 C -0.11 -2.50 10.53 30.59 0.32 -2.18 16 17 C -0.13 -3.18 10.53 30.60 0.32 -2.86 16 18 C -0.21 -6.23 5.48 -52.17 -0.29 -6.52 16 19 C -0.13 -3.69 10.53 30.60 0.32 -3.37 16 20 C -0.12 -2.77 10.53 30.59 0.32 -2.45 16 21 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 22 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 23 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 24 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 25 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 27 H 0.35 15.42 7.16 -89.69 -0.64 14.78 16 28 H 0.09 3.09 7.60 -2.39 -0.02 3.07 16 29 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -62.45 303.96 2.21 -60.24 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.40 Total: 25.15 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 2.58 Total: -45.93 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -2.79 Total: -85.64 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -62.45 2.21 -60.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715346124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.188 kcal (2) G-P(sol) polarization free energy of solvation -62.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds