Wall clock time and date at job start Mon Mar 30 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46946 * 2 1 4 4 C 1.50699 * 109.46947 * 120.00430 * 2 1 3 5 5 H 1.07999 * 119.99659 * 119.99639 * 4 2 1 6 6 C 1.37871 * 120.00106 * 299.99860 * 4 2 1 7 7 N 1.31514 * 119.99946 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00307 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47096 * 89.99802 * 8 6 4 10 10 H 1.48494 * 109.47547 * 210.00059 * 8 6 4 11 11 H 1.48498 * 109.47005 * 330.00124 * 8 6 4 12 12 N 1.46903 * 109.46910 * 240.00399 * 2 1 3 13 13 C 1.46898 * 111.00182 * 85.00310 * 12 2 1 14 14 C 1.53004 * 109.47044 * 180.02562 * 13 12 2 15 15 C 1.52995 * 117.49405 * 184.99784 * 14 13 12 16 16 C 1.52993 * 138.58964 * 23.38522 * 15 14 13 17 17 C 1.53002 * 60.03097 * 130.87404 * 16 15 14 18 18 C 1.52982 * 60.00085 * 252.48503 * 15 14 13 19 19 C 1.52995 * 138.59669 * 229.11242 * 18 15 14 20 20 C 1.53001 * 138.59156 * 130.88487 * 18 15 14 21 21 H 1.08995 * 109.47337 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46904 * 299.99720 * 1 2 3 23 23 H 1.09002 * 109.46920 * 59.99443 * 1 2 3 24 24 H 0.97002 * 120.00327 * 179.97438 * 7 6 4 25 25 H 1.00899 * 111.00125 * 321.04916 * 12 2 1 26 26 H 1.08990 * 109.47411 * 59.99747 * 13 12 2 27 27 H 1.09006 * 109.46615 * 299.99870 * 13 12 2 28 28 H 1.09000 * 115.55029 * 330.66794 * 14 13 12 29 29 H 1.09002 * 117.49972 * 238.37505 * 16 15 14 30 30 H 1.09002 * 117.49720 * 23.37391 * 16 15 14 31 31 H 1.09000 * 117.49996 * 107.50719 * 17 16 15 32 32 H 1.09007 * 117.49696 * 252.52389 * 17 16 15 33 33 H 1.09000 * 117.49729 * 336.59108 * 19 18 15 34 34 H 1.09000 * 117.50362 * 121.61253 * 19 18 15 35 35 H 1.08993 * 117.50506 * 238.39428 * 20 18 15 36 36 H 1.09003 * 117.49293 * 23.39687 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3224 -1.1198 4.0078 9 1 3.6305 -0.5443 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4879 -2.5656 3.7120 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5950 -0.5331 -3.5746 15 6 2.8440 0.2760 -4.8490 16 6 3.1370 1.7229 -5.2507 17 6 3.9988 0.5864 -5.8045 18 6 1.6459 -0.6718 -4.7664 19 6 1.0028 -1.7836 -5.5977 20 6 0.1415 -0.6466 -5.0441 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7081 1.1606 3.4844 25 1 1.4495 -1.4978 -1.4102 26 1 2.7589 1.0462 -2.1182 27 1 1.0871 0.6165 -2.5525 28 1 3.2677 -1.3653 -3.3673 29 1 2.4403 2.2059 -5.9359 30 1 3.5841 2.3732 -4.4989 31 1 3.8693 0.3219 -6.8539 32 1 5.0129 0.4889 -5.4166 33 1 1.2006 -1.7892 -6.6695 34 1 0.9006 -2.7644 -5.1332 35 1 -0.5272 -0.8793 -4.2156 36 1 -0.2272 0.0961 -5.7517 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716610447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:16 Heat of formation + Delta-G solvation = 86.885526 kcal Electronic energy + Delta-G solvation = -14755.593687 eV Core-core repulsion = 12435.559650 eV Total energy + Delta-G solvation = -2320.034037 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.87481 -35.80182 -34.99808 -32.69142 -30.73381 -27.96392 -25.13426 -23.79256 -22.51909 -22.07476 -20.14684 -19.12825 -18.22508 -16.22753 -15.30604 -15.21767 -14.89340 -14.64021 -14.24430 -13.29648 -13.04588 -12.45795 -12.15851 -11.60306 -11.54628 -11.49661 -11.40579 -11.01566 -10.87056 -10.78803 -10.49735 -10.23163 -10.09852 -9.87235 -9.51704 -9.42906 -9.36457 -8.94229 -8.32816 -7.18195 -5.95033 -3.98204 3.35313 3.41126 3.43729 3.45917 3.68593 4.19257 4.27563 4.44654 4.52530 4.91534 5.26045 5.36409 5.45003 5.49023 5.54341 5.61347 5.64009 5.77574 5.80641 5.87392 5.97415 6.02485 6.09716 6.15527 6.17618 6.39573 6.62716 6.73600 6.88199 7.14142 7.42129 7.77502 7.92655 8.31812 8.59395 8.66723 9.09222 9.67078 11.12088 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.040410 B = 0.005731 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.735980 B = 4884.219131 C = 5081.967675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.090 3.910 14 C -0.033 4.033 15 C -0.175 4.175 16 C -0.133 4.133 17 C -0.134 4.134 18 C -0.178 4.178 19 C -0.134 4.134 20 C -0.133 4.133 21 H 0.027 0.973 22 H 0.088 0.912 23 H 0.004 0.996 24 H 0.259 0.741 25 H 0.325 0.675 26 H 0.068 0.932 27 H 0.023 0.977 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 -1.097 -15.246 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.040 4.040 14 C -0.051 4.051 15 C -0.175 4.175 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.178 4.178 19 C -0.171 4.171 20 C -0.170 4.170 21 H 0.046 0.954 22 H 0.107 0.893 23 H 0.023 0.977 24 H 0.069 0.931 25 H 0.141 0.859 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.130 0.870 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.626 -0.891 -14.923 15.038 hybrid contribution -0.750 -0.239 0.577 0.976 sum 0.876 -1.130 -14.346 14.417 Atomic orbital electron populations 1.22420 1.00748 0.99131 1.00424 1.19166 0.89588 0.94402 0.86511 0.94964 1.21173 1.30068 1.12397 0.89624 0.91947 1.24956 0.95366 0.95244 0.99045 1.69888 1.37373 1.23315 1.23281 0.86502 0.78427 0.80024 0.82445 1.20779 1.21448 1.19942 1.60807 1.57990 1.09106 1.03332 1.21415 0.98296 0.95294 0.88963 1.22073 0.97332 0.98675 0.87003 1.21274 0.97862 0.96970 1.01435 1.22639 1.02011 0.89836 1.02508 1.22675 0.94876 1.01882 0.97665 1.21363 0.91638 1.01511 1.03272 1.22663 1.02210 0.93713 0.98528 1.22632 0.91126 1.00616 1.02599 0.95388 0.89306 0.97674 0.93113 0.85911 0.91362 0.95891 0.86953 0.89036 0.88336 0.89078 0.88485 0.89124 0.88473 0.88417 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.94 37.16 0.33 -3.80 16 2 C 0.21 5.43 2.57 -68.86 -0.18 5.25 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.51 16 4 C -0.49 -13.91 8.84 -34.44 -0.30 -14.21 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.07 11.32 55.43 0.63 -25.44 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 12 N -0.68 -14.92 6.23 -107.95 -0.67 -15.59 16 13 C 0.09 1.70 5.77 -3.82 -0.02 1.68 16 14 C -0.03 -0.52 5.95 -90.62 -0.54 -1.06 16 15 C -0.17 -2.47 5.40 -154.49 -0.83 -3.30 16 16 C -0.13 -1.62 10.53 -26.73 -0.28 -1.90 16 17 C -0.13 -1.55 10.53 -26.69 -0.28 -1.83 16 18 C -0.18 -2.54 5.28 -154.52 -0.82 -3.36 16 19 C -0.13 -1.60 10.53 -26.73 -0.28 -1.88 16 20 C -0.13 -1.70 10.53 -26.73 -0.28 -1.98 16 21 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 22 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 23 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.32 6.77 8.47 -39.29 -0.33 6.44 16 26 H 0.07 1.34 8.05 -51.93 -0.42 0.93 16 27 H 0.02 0.45 7.25 -51.93 -0.38 0.07 16 28 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 301.21 15.07 4.54 4.54 Total: -1.00 -28.93 301.21 -10.11 -39.05 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.01 Total: 5.69 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -3.58 Total: -24.96 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.05 Total: -41.03 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.93 -10.11 -39.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716610447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.934 kcal (2) G-P(sol) polarization free energy of solvation -28.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds