Wall clock time and date at job start Mon Mar 30 2020 02:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46946 * 2 1 4 4 C 1.50699 * 109.46947 * 120.00430 * 2 1 3 5 5 H 1.07999 * 119.99659 * 119.99639 * 4 2 1 6 6 C 1.37871 * 120.00106 * 299.99860 * 4 2 1 7 7 N 1.31514 * 119.99946 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00307 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47096 * 89.99802 * 8 6 4 10 10 H 1.48494 * 109.47547 * 210.00059 * 8 6 4 11 11 H 1.48498 * 109.47005 * 330.00124 * 8 6 4 12 12 N 1.46903 * 109.46910 * 240.00399 * 2 1 3 13 13 C 1.46898 * 111.00182 * 85.00310 * 12 2 1 14 14 C 1.53004 * 109.47044 * 180.02562 * 13 12 2 15 15 C 1.52995 * 117.49405 * 184.99784 * 14 13 12 16 16 C 1.52993 * 138.58964 * 23.38522 * 15 14 13 17 17 C 1.53002 * 60.03097 * 130.87404 * 16 15 14 18 18 C 1.52982 * 60.00085 * 252.48503 * 15 14 13 19 19 C 1.52995 * 138.59669 * 229.11242 * 18 15 14 20 20 C 1.53001 * 138.59156 * 130.88487 * 18 15 14 21 21 H 1.08995 * 109.47337 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46904 * 299.99720 * 1 2 3 23 23 H 1.09002 * 109.46920 * 59.99443 * 1 2 3 24 24 H 0.97002 * 120.00327 * 179.97438 * 7 6 4 25 25 H 1.00899 * 111.00125 * 321.04916 * 12 2 1 26 26 H 1.08990 * 109.47411 * 59.99747 * 13 12 2 27 27 H 1.09006 * 109.46615 * 299.99870 * 13 12 2 28 28 H 1.09000 * 115.55029 * 330.66794 * 14 13 12 29 29 H 1.09002 * 117.49972 * 238.37505 * 16 15 14 30 30 H 1.09002 * 117.49720 * 23.37391 * 16 15 14 31 31 H 1.09000 * 117.49996 * 107.50719 * 17 16 15 32 32 H 1.09007 * 117.49696 * 252.52389 * 17 16 15 33 33 H 1.09000 * 117.49729 * 336.59108 * 19 18 15 34 34 H 1.09000 * 117.50362 * 121.61253 * 19 18 15 35 35 H 1.08993 * 117.50506 * 238.39428 * 20 18 15 36 36 H 1.09003 * 117.49293 * 23.39687 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3224 -1.1198 4.0078 9 1 3.6305 -0.5443 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4879 -2.5656 3.7120 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5950 -0.5331 -3.5746 15 6 2.8440 0.2760 -4.8490 16 6 3.1370 1.7229 -5.2507 17 6 3.9988 0.5864 -5.8045 18 6 1.6459 -0.6718 -4.7664 19 6 1.0028 -1.7836 -5.5977 20 6 0.1415 -0.6466 -5.0441 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7081 1.1606 3.4844 25 1 1.4495 -1.4978 -1.4102 26 1 2.7589 1.0462 -2.1182 27 1 1.0871 0.6165 -2.5525 28 1 3.2677 -1.3653 -3.3673 29 1 2.4403 2.2059 -5.9359 30 1 3.5841 2.3732 -4.4989 31 1 3.8693 0.3219 -6.8539 32 1 5.0129 0.4889 -5.4166 33 1 1.2006 -1.7892 -6.6695 34 1 0.9006 -2.7644 -5.1332 35 1 -0.5272 -0.8793 -4.2156 36 1 -0.2272 0.0961 -5.7517 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716610447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:15 Heat of formation + Delta-G solvation = 71.165955 kcal Electronic energy + Delta-G solvation = -14756.275339 eV Core-core repulsion = 12435.559650 eV Total energy + Delta-G solvation = -2320.715689 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.98549 -37.63278 -35.96644 -34.62647 -32.26368 -29.66936 -27.26658 -25.38300 -23.48421 -22.99854 -22.14813 -20.42933 -19.23503 -18.31303 -16.79698 -16.50752 -16.22756 -15.84767 -15.78411 -15.03196 -14.77819 -14.01580 -13.66147 -13.54514 -12.88684 -12.88139 -12.63746 -12.51358 -12.43347 -12.34585 -12.17700 -12.05073 -11.78939 -11.34421 -11.03393 -10.62660 -10.52250 -10.49317 -10.39726 -9.00337 -8.10222 -6.21981 1.43610 1.43986 1.55280 2.41374 2.46299 2.59992 3.13755 3.17922 3.29680 3.35837 3.82732 4.00312 4.30672 4.36860 4.48355 4.53720 4.57628 4.71278 4.72210 4.74237 4.80934 4.84989 4.85742 4.90713 4.97800 5.07059 5.09477 5.19587 5.24698 5.26163 5.42305 5.67584 5.80210 6.25485 6.62917 6.80314 6.92936 7.48167 8.95642 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.040410 B = 0.005731 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.735980 B = 4884.219131 C = 5081.967675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H -0.001 1.001 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.964 3.036 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.684 5.684 13 C 0.101 3.899 14 C -0.052 4.052 15 C -0.191 4.191 16 C -0.134 4.134 17 C -0.116 4.116 18 C -0.193 4.193 19 C -0.116 4.116 20 C -0.136 4.136 21 H 0.033 0.967 22 H 0.062 0.938 23 H 0.021 0.979 24 H 0.261 0.739 25 H 0.331 0.669 26 H 0.051 0.949 27 H 0.016 0.984 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 -1.853 -16.608 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.107 3.893 3 H 0.017 0.983 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.193 1.193 12 N -0.314 5.314 13 C -0.029 4.029 14 C -0.070 4.070 15 C -0.192 4.192 16 C -0.171 4.171 17 C -0.153 4.153 18 C -0.193 4.193 19 C -0.153 4.153 20 C -0.172 4.172 21 H 0.052 0.948 22 H 0.081 0.919 23 H 0.040 0.960 24 H 0.070 0.930 25 H 0.148 0.852 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.848 -1.652 -16.304 16.492 hybrid contribution -0.816 0.032 0.960 1.261 sum 1.032 -1.620 -15.344 15.464 Atomic orbital electron populations 1.22215 0.99923 0.99252 0.99926 1.18944 0.90125 0.92618 0.87659 0.98343 1.21451 1.30504 1.12529 0.91021 0.92660 1.25754 0.95404 0.95900 1.01997 1.70015 1.37997 1.24360 1.24049 0.85468 0.77926 0.79038 0.78638 1.20314 1.20781 1.19275 1.60675 1.57738 1.09573 1.03380 1.21286 0.97621 0.94726 0.89231 1.21744 0.99250 0.99352 0.86697 1.21382 0.99145 0.98467 1.00173 1.22772 1.02421 0.89264 1.02630 1.22824 0.94300 1.00018 0.98109 1.21444 0.92478 1.03272 1.02077 1.22801 0.99898 0.93233 0.99360 1.22734 0.90137 1.01617 1.02761 0.94810 0.91875 0.95961 0.92952 0.85181 0.93044 0.96541 0.87769 0.87624 0.88738 0.87020 0.87894 0.87028 0.87975 0.89242 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.66 8.94 71.98 0.64 -7.02 16 2 C 0.22 11.35 2.57 44.17 0.11 11.46 16 3 H 0.00 -0.08 7.80 -2.39 -0.02 -0.10 16 4 C -0.52 -29.53 8.84 25.60 0.23 -29.31 16 5 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 6 C 0.01 0.42 5.30 84.65 0.45 0.87 16 7 N -0.92 -54.31 11.32 21.44 0.24 -54.07 16 8 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.68 -30.48 6.23 -495.44 -3.09 -33.57 16 13 C 0.10 3.90 5.77 86.30 0.50 4.39 16 14 C -0.05 -1.67 5.95 -10.80 -0.06 -1.73 16 15 C -0.19 -5.12 5.40 -52.17 -0.28 -5.41 16 16 C -0.13 -3.04 10.53 30.59 0.32 -2.71 16 17 C -0.12 -2.38 10.53 30.62 0.32 -2.05 16 18 C -0.19 -5.22 5.28 -52.19 -0.28 -5.49 16 19 C -0.12 -2.46 10.53 30.59 0.32 -2.14 16 20 C -0.14 -3.21 10.53 30.60 0.32 -2.89 16 21 H 0.03 1.59 8.13 -2.39 -0.02 1.57 16 22 H 0.06 3.49 6.07 -2.39 -0.01 3.47 16 23 H 0.02 0.98 7.45 -2.39 -0.02 0.96 16 24 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.33 13.94 8.47 -89.69 -0.76 13.18 16 26 H 0.05 2.11 8.05 -2.39 -0.02 2.09 16 27 H 0.02 0.65 7.25 -2.38 -0.02 0.63 16 28 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 29 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -61.79 301.21 2.06 -59.72 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.29 Total: 23.26 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 2.60 Total: -42.02 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -2.85 Total: -87.64 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -61.79 2.06 -59.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716610447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.890 kcal (2) G-P(sol) polarization free energy of solvation -61.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds